Examples ultraMask2Mesh

About the Application

ultraMask2Mesh reconstructs two-manifold watertight surface mesh models from input .TIFF masks that are already segmented.

Example 1

Description

This example takes an input mask of a segmented astrocyte and reconstructs a smooth watertight mesh.

Command Line

ultraMask2Mesh \
    --mask-directory ultraMask2Mesh/input/astrocyte-mask \
    --output-directory ultraMask2Mesh/example-1 \
    --mask-width 230 --mask-height 376 \
    --export-obj-mesh --optimize-mesh --laplacian-iterations 10 \ 
    --project-xy --project-zy --project-xz \
    --ignore-marching-cubes-mesh --ignore-laplacian-mesh --ignore-optimized-mesh

Input & Output Data

The application takes a series of .TIFF images in an input directory astrocyte and creates an output mesh astrocyte-watertight.obj.