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Phylogenetic Trees

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Robert J. Gifford edited this page Oct 15, 2024 · 2 revisions

Influenza A Virus

Influenza B Virus

Influenza C Virus

Influenza D Virus

Flu-GLUE

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Native Installation
  5. Docker Installation
  6. Usage

Flu Core Project

  1. Overview
  2. Database Schema
  3. Genome Features
  4. Sequence Data
  5. Alignment Tree
  6. Phylogenetic Trees
  7. Segment Recognition
  8. Genotyping Tools

Expanding the Dataset

  1. Background
  2. Filtering
  3. Filtering Process

Usage

  1. Sequences
  2. Alignments
  3. Mutation Frequencies

GLUE Framework

User Guide

  1. Project Data Model
  2. Schema Extensions
  3. Modules
  4. Alignments
  5. Variations
  6. Scripting Layer
  7. Freemarker Templates

Command Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference
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