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Robert J. Gifford edited this page Oct 20, 2024 · 8 revisions

Isolate databases

Influenza Virus Species Sequence Entries File Complete Genome Isolates Incomplete Genome Isolates
Influenza A virus Sequence Entries Complete Genome Isolates Incomplete Genome Isolates
Influenza B virus Sequence Entries Complete Genome Isolates Incomplete Genome Isolates
Influenza C virus Sequence Entries Complete Genome Isolates Incomplete Genome Isolates
Influenza D virus Sequence Entries Complete Genome Isolates Incomplete Genome Isolates

Flu-GLUE

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Native Installation
  5. Docker Installation
  6. Usage

Flu Core Project

  1. Overview
  2. Database Schema
  3. Genome Features
  4. Sequence Data
  5. Alignment Tree
  6. Phylogenetic Trees
  7. Segment Recognition
  8. Genotyping Tools

Expanding the Dataset

  1. Background
  2. Filtering
  3. Filtering Process

Usage

  1. Sequences
  2. Alignments
  3. Mutation Frequencies

GLUE Framework

User Guide

  1. Project Data Model
  2. Schema Extensions
  3. Modules
  4. Alignments
  5. Variations
  6. Scripting Layer
  7. Freemarker Templates

Command Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference
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