SeqFu v1.8.3

• Markdown documentation improvements
• Splashscreen for fu-virfilter fixed
• Argument parser for fu-cov improved
• Now seqfu --version and seqfu version will print the version number and exit
• Added test for fu-cov
• Added citation in main command and repository

SeqFu v1.8.2

• Added fu-virfilter to filter VirFinder results
• Bugfix in seqfu cat --basename: the last update made it working only when prefix was also specified

SeqFu v1.8.1

• introduced fu-homocomp to compress homopolymers

SeqFu v1.8.0

• added seqfu list to extract sequences via a list

SeqFu v1.7.2

• seqfu grep supports for comments

SeqFu v1.7.1

• Bugfix release: seqfu cat with no parameters was stripping the reads name

v1.6.3

• In seqfu head you must use --quiet and the short version is no longer allowed.

SeqFu v1.6.0

• Improved STDIN messages, that can be disabled by $SEQFU_QUIET=1
• Added --format irida in seqfu metadata (for IRIDA uploader)
• Added --gc in seqfu qual: will print an additional column with the GC content
• Minor improvements on seqfu cat

SeqFu v1.5.2

• seqfu cat has new options to manipulate the sequence name (like --append STRING) and to add comments (like --add-len, --add-gc)

SeqFu v1.5.0

• seqfu count now multithreading and redesigned. The output format is identical but the order of the records is not protected (use seqfu count-legacy if needed)
• seqfu cat can print a list of sequences matching the criteria (--list)