Added , in pipeline.smk

ssi-dk · Nov 14, 2024 · e8fd1ee · e8fd1ee
1 parent 416d7b2
commit e8fd1ee
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/bifrost_chewbbaca/pipeline.smk b/bifrost_chewbbaca/pipeline.smk
@@ -128,7 +128,7 @@ rule blast_gene_call:
         chewbbaca_blastdb = f"{os.environ['BIFROST_CG_MLST_DIR']}/blastdb/",
     output:
         gene_call_results = directory(f"{component['name']}/blast_gene_call_results")
-        gene_call_done
+        gene_call_done = f"{component['name']}/blast_gene_call_done"
     script:
         os.path.join(os.path.dirname(workflow.snakefile), "rule__blast_genecall.py")
 
@@ -143,7 +143,7 @@ rule run_chewbbaca_on_genome:
         f"{component['name']}/benchmarks/{rule_name}.benchmark"
     input:
         rules.check_requirements.output.check_file,
-        rules.blast_gene_call.output.gene_call_results,
+        rules.blast_gene_call.output.gene_call_done,
         genome = f"{sample['categories']['contigs']['summary']['data']}"
     output:
         chewbbaca_results = directory(f"{component['name']}/chewbbaca_results"),