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updated pipeline parameters for gene_blast Solve conda environment #78: Commit e7c2eb2 pushed by RAHenriksen
January 21, 2025 13:59 59s dev_raah
dev_raah
January 21, 2025 13:59 59s
updated log for succesful run of fasta chunk to blast to chewbacca Solve conda environment #77: Commit 435f63a pushed by RAHenriksen
January 21, 2025 13:43 1m 0s dev_raah
dev_raah
January 21, 2025 13:43 1m 0s
seperate query fasta into equal size chunks to minimize memory (solve… Solve conda environment #76: Commit cbca468 pushed by RAHenriksen
January 21, 2025 10:19 47s dev_raah
dev_raah
January 21, 2025 10:19 47s
Merge branch 'dev_raah' with conflict resolutions Solve conda environment #75: Commit 9197e9f pushed by RAHenriksen
January 17, 2025 10:21 43s dev_raah
dev_raah
January 17, 2025 10:21 43s
added temporary print checks Solve conda environment #74: Commit 512cca5 pushed by RAHenriksen
January 17, 2025 10:08 53s dev_raah
dev_raah
January 17, 2025 10:08 53s
updated species specific blast databases with additional campylobacter Solve conda environment #73: Commit 9cff830 pushed by RAHenriksen
January 17, 2025 09:28 1m 34s main
main
January 17, 2025 09:28 1m 34s
updated genecall functionality Solve conda environment #72: Commit 79eb292 pushed by RAHenriksen
January 15, 2025 11:55 1m 7s dev_raah
dev_raah
January 15, 2025 11:55 1m 7s
updated blat db in config resources Solve conda environment #71: Commit b555183 pushed by RAHenriksen
January 13, 2025 09:52 55s main
main
January 13, 2025 09:52 55s
updated blat db in config Solve conda environment #70: Commit 4134b3d pushed by RAHenriksen
January 13, 2025 09:49 54s main
main
January 13, 2025 09:49 54s
updated blat pipelines for accurate incorporation of blat db Solve conda environment #69: Commit fae62e8 pushed by RAHenriksen
January 13, 2025 08:43 1m 0s dev_raah
dev_raah
January 13, 2025 08:43 1m 0s
updated config yaml for blat db Solve conda environment #68: Commit fce9fca pushed by RAHenriksen
January 13, 2025 08:42 57s dev_raah
dev_raah
January 13, 2025 08:42 57s
mmseqs pipe init Solve conda environment #67: Commit 622bfa9 pushed by RAHenriksen
January 2, 2025 12:46 1m 16s dev_raah
dev_raah
January 2, 2025 12:46 1m 16s
udpate Solve conda environment #66: Commit 6adfa51 pushed by RAHenriksen
January 2, 2025 10:35 1m 14s dev_raah
dev_raah
January 2, 2025 10:35 1m 14s
alternative commadns update Solve conda environment #65: Commit fd1726b pushed by RAHenriksen
January 2, 2025 10:30 1m 8s dev_raah
dev_raah
January 2, 2025 10:30 1m 8s
mmseqs gene call clean up and finished definitions Solve conda environment #64: Commit 3ba2ca9 pushed by RAHenriksen
December 30, 2024 08:46 1m 21s dev_raah
dev_raah
December 30, 2024 08:46 1m 21s
renaming of blast to blat Solve conda environment #63: Commit 8c6c4d1 pushed by RAHenriksen
December 30, 2024 08:33 1m 8s dev_raah
dev_raah
December 30, 2024 08:33 1m 8s
blat pipeline and beginning mmseqs cmd Solve conda environment #62: Commit f34f917 pushed by RAHenriksen
December 27, 2024 15:53 1m 3s dev_raah
dev_raah
December 27, 2024 15:53 1m 3s
finalized blat function Solve conda environment #61: Commit f8c1f21 pushed by RAHenriksen
December 27, 2024 15:52 1m 15s dev_raah
dev_raah
December 27, 2024 15:52 1m 15s
added blat command for similar functionality as blast Solve conda environment #60: Commit f254f5d pushed by RAHenriksen
December 27, 2024 10:37 56s dev_raah
dev_raah
December 27, 2024 10:37 56s
Another fix to Blast failing error message Solve conda environment #59: Commit 0ff2d3e pushed by RAHenriksen
December 23, 2024 08:48 1m 15s dev_raah
dev_raah
December 23, 2024 08:48 1m 15s
Another fix to Blast failing error message Solve conda environment #58: Commit 0ff2d3e pushed by kriskiil
December 18, 2024 10:09 1m 4s main
main
December 18, 2024 10:09 1m 4s
Another fix to Blast failing error message Solve conda environment #57: Commit 2d8b4fe pushed by kriskiil
December 18, 2024 09:27 1m 6s main
main
December 18, 2024 09:27 1m 6s
Fixed f-string quotation error Solve conda environment #56: Commit 83ab3e4 pushed by kriskiil
December 17, 2024 10:23 1m 13s main
main
December 17, 2024 10:23 1m 13s
Throw an error if blastn fails with non-zero exit code Solve conda environment #55: Commit 828a571 pushed by kriskiil
December 17, 2024 09:10 1m 10s main
main
December 17, 2024 09:10 1m 10s
Added error output log to blast call Solve conda environment #54: Commit 863d453 pushed by kriskiil
December 17, 2024 09:00 1m 3s main
main
December 17, 2024 09:00 1m 3s