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389 Open 7,736 Closed
389 Open 7,736 Closed
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Issues list

FindAllmarkers => Doheatmap => Heterogeneous clusters
#9661 opened Jan 31, 2025 by karabicicim
SCT data or scale.data to select top highly expressed genes in scRNAseq to compare with VST-transformed values in bulkRNAseq?
#9660 opened Jan 31, 2025 by denvercal1234GitHub
Error when projecting reference dataset with on-disc data matrix: "Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 't': Argument 'x' must be of type logical, integer or numeric, not 'list'" bug Something isn't working
#9659 opened Jan 31, 2025 by sbamopoulos
Add raster.dpias parameter for VlnPlot enhancement New feature or request
#9656 opened Jan 29, 2025 by lucygarner
Single cell- feature plots and dot plots
#9655 opened Jan 29, 2025 by isaiao01
Normalisation / SCTransform for SVG spatial analysis
#9654 opened Jan 29, 2025 by cathalgking
Integrating multiple Visium HD samples
#9652 opened Jan 27, 2025 by pratibha-bioinfo
Cell type classification with or without reference integration?
#9650 opened Jan 27, 2025 by ernohanninen
Visium HD Analysis Vignette Question
#9649 opened Jan 24, 2025 by cedwa29
8
AggregateExpression on CITEseq protein data bug Something isn't working
#9648 opened Jan 24, 2025 by yacine902
integration RPCA selecting layer
#9646 opened Jan 24, 2025 by salvatore92
Is ScaleData by layer? documentation Error in documentation
#9645 opened Jan 23, 2025 by leetde
How to integrate WNN in Suerat v5
#9643 opened Jan 23, 2025 by codeneeded
Can Mixscape Analyze High MOI Data?
#9640 opened Jan 22, 2025 by Huifang-Xu
Positive and Negative markers are the same after running DEenrichRPlot function bug Something isn't working
#9638 opened Jan 22, 2025 by JS0715
scRNA.sub =subset(scRNAnew, downsample=30) ，argument "downsample" didn't work,what ‘s wrong?
#9637 opened Jan 22, 2025 by seekning
Split does not split counts in two layers
#9635 opened Jan 22, 2025 by AndrewOkin
6
Issue Overlaying new Seurat object cells onto a previously integrated Seurat object
#9633 opened Jan 21, 2025 by gm9756
Error: NotImplemented: Support for codec 'zstd' not built bug Something isn't working
#9632 opened Jan 21, 2025 by shanhuhai-i
scTranform stuck on step: Get Negative Binomial regression parameters per gene Using 2000 genes, 5000 cells for large dataset
#9631 opened Jan 21, 2025 by PinaColadast
convert h5ad to seurat bug Something isn't working
#9630 opened Jan 20, 2025 by salvatore92
3
integrate two separate datasets
#9629 opened Jan 20, 2025 by salvatore92
1
Seurat object in ShinyApp
#9623 opened Jan 16, 2025 by malonzm1
10
Error - Execution of IntegrateLayers() function
#9622 opened Jan 16, 2025 by sentisci
Metadata not properly using cell names to assign metadata
#9621 opened Jan 16, 2025 by eheinrichs
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