Fixed labels_to_edges typo

examples/stardist_2d/2d_tracking.ipynb

@@ -76,7 +76,7 @@
     "\n",
     "from ultrack import track, to_tracks_layer, tracks_to_zarr\n",
     "from ultrack.imgproc import normalize\n",
-    "from ultrack.utils import estimate_parameters_from_labels, labels_to_edges\n",
+    "from ultrack.utils import estimate_parameters_from_labels, labels_to_contours\n",
     "from ultrack.utils.array import array_apply\n",
     "from ultrack.config import MainConfig"
    ]
@@ -210,7 +210,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "The `labels_to_edges` converts labels into Ultrack's expected input, a detection and edges maps (cells' boundaries). The `sigma` parameter blurs the cell boundaries, assisting the segmentation hypothesis estimation, the goal is to make the boundaries similar to a distance transform inside the cells."
+    "The `labels_to_contours` converts labels into Ultrack's expected input, a detection and edges maps (cells' boundaries). The `sigma` parameter blurs the cell boundaries, assisting the segmentation hypothesis estimation, the goal is to make the boundaries similar to a distance transform inside the cells."
    ]
   },
   {
@@ -227,7 +227,7 @@
     }
    ],
    "source": [
-    "detection, edges = labels_to_edges(stardist_labels, sigma=4.0)  # multiple labels can be used with [labels_0, labels_1, ...]"
+    "detection, edges = labels_to_contours(stardist_labels, sigma=4.0)  # multiple labels can be used with [labels_0, labels_1, ...]"
    ]
   },
   {

setup.cfg

@@ -38,7 +38,7 @@ install_requires =
     fastapi >= 0.109.2
     websocket >= 0.2.1
     urllib3 < 2.0
-    ome-zarr >= 0.8.3
+    ome-zarr >= 0.8.3,<0.9.0   # TODO: unpin when using iohub interface
     uvicorn >= 0.27.0.post1
     httpx >= 0.26.0
     websockets >= 12.0

ultrack/utils/__init__.py

@@ -1,2 +1,2 @@
-from ultrack.utils.edge import labels_to_contours
+from ultrack.utils.edge import labels_to_contours, labels_to_edges
 from ultrack.utils.estimation import estimate_parameters_from_labels

ultrack/utils/edge.py

@@ -106,5 +106,5 @@ def labels_to_contours(
 
 
 @wraps(labels_to_contours)
-def labels_to_edgs(*args, **kwargs) -> Tuple[ArrayLike, ArrayLike]:
+def labels_to_edges(*args, **kwargs) -> Tuple[ArrayLike, ArrayLike]:
     return labels_to_contours(*args, **kwargs)