PREP: first pass at pathogenome distro #400
Triggered via pull request
September 5, 2024 21:20
lizgehret
Status
Failure
Total duration
1h 18m 38s
Artifacts
6
ci-distro-trial.yaml
on: pull_request
prepare
/
detect-vars
5s
Matrix: rebuild-0 / run_matrix
Matrix: rebuild-1 / run_matrix
Matrix: rebuild-2 / run_matrix
Matrix: rebuild-3 / run_matrix
Matrix: rebuild-4 / run_matrix
Matrix: rebuild-5 / run_matrix
Matrix: rebuild-6 / run_matrix
Matrix: rebuild-7 / run_matrix
Waiting for pending jobs
Matrix: build-metapackage / build-metapackage
Matrix: test-metapackage / run_matrix
Waiting for pending jobs
upload-builds
/
commit-changes
Annotations
2 errors and 57 warnings
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build-metapackage / build-metapackage (macos-12)
Process completed with exit code 1.
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build-metapackage / build-metapackage (ubuntu-latest)
Process completed with exit code 1.
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prepare / detect-vars
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, tj-actions/[email protected]. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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prepare / prepare
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v4, actions/cache/restore@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-0 / Set up build matrix
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-0 / qiime2/q2templates (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-0 / qiime2/qiime2 (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-0 / qiime2/qiime2 (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-0 / qiime2/q2templates (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-0 / Finalize generation
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-1 / Set up build matrix
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-1 / qiime2/q2-mystery-stew (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-1 / qiime2/q2cli (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-1 / qiime2/q2-types (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-1 / qiime2/q2cli (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-1 / qiime2/q2-mystery-stew (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-1 / qiime2/q2-types (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-1 / Finalize generation
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-2 / Set up build matrix
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-2 / qiime2/q2-feature-table (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-2 / qiime2/q2-taxa (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-2 / qiime2/q2-demux (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-2 / qiime2/q2-feature-table (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-2 / qiime2/q2-demux (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-2 / qiime2/q2-taxa (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-2 / Finalize generation
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-3 / Set up build matrix
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-3 / qiime2/q2-quality-control (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-3 / qiime2/q2-sample-classifier (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-3 / bokulich-lab/q2-assembly (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-3 / qiime2/q2-quality-control (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-3 / qiime2/q2-sample-classifier (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-3 / bokulich-lab/q2-assembly (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-3 / Finalize generation
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-4 / Set up build matrix
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-4 / qiime2/q2-feature-classifier (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-4 / qiime2/q2-longitudinal (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-4 / qiime2/q2-longitudinal (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-4 / qiime2/q2-feature-classifier (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-4 / Finalize generation
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-5 / Set up build matrix
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-5 / bokulich-lab/RESCRIPt (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-5 / bokulich-lab/RESCRIPt (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-5 / Finalize generation
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / Set up build matrix
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / bokulich-lab/q2-amr (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / qiime2/q2-stats (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / bokulich-lab/q2-viromics (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / qiime2/q2-vizard (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / caporaso-lab/genome-sampler (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / qiime2/q2-vizard (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / bokulich-lab/q2-amr (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / bokulich-lab/q2-viromics (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / caporaso-lab/genome-sampler (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / qiime2/q2-stats (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/download-artifact@v3, actions/checkout@v3, actions/cache/restore@v3, actions/cache/save@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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rebuild-6 / Finalize generation
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build-metapackage / build-metapackage (macos-12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build-metapackage / build-metapackage (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/download-artifact@v3, actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "[Conda Channel] Mirror with patches (a915f4ceed63dec2bdcbf2d9df7f2116d39e9cb17bef3ca524dd722b9bdb1bff)", "[Conda Channel] Rebuilt packages", "[Environment File] Metapackage seed environment", "[GHA Matrix] Packages to rebuild and test", "[Reverse Dependencies] Packages to rebuild and their reverse dependencies", "[Version Files] Rebuilt version info".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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[Conda Channel] Mirror with patches (a915f4ceed63dec2bdcbf2d9df7f2116d39e9cb17bef3ca524dd722b9bdb1bff)
Expired
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1.39 KB |
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[Conda Channel] Rebuilt packages
Expired
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86.2 MB |
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[Environment File] Metapackage seed environment
Expired
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1.21 KB |
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[GHA Matrix] Packages to rebuild and test
Expired
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763 Bytes |
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[Reverse Dependencies] Packages to rebuild and their reverse dependencies
Expired
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2.44 KB |
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[Version Files] Rebuilt version info
Expired
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674 Bytes |
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