Skip to content
@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

Pinned Loading

  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 483 242

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 74 repositories
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 5 3 Updated Jan 9, 2025
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 3 0 Updated Jan 9, 2025
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 20 10 2 Updated Jan 8, 2025
  • q2-vizard Public

    The first choice of wizard lizards for interactive, generalized microbiome data visualization!

    qiime2/q2-vizard’s past year of commit activity
    Python 1 BSD-3-Clause 9 6 1 Updated Jan 8, 2025
  • q2-types Public
    qiime2/q2-types’s past year of commit activity
    Python 17 BSD-3-Clause 41 26 (3 issues need help) 4 Updated Jan 8, 2025
  • q2-taxa Public
    qiime2/q2-taxa’s past year of commit activity
    Python 3 BSD-3-Clause 29 43 0 Updated Jan 9, 2025
  • q2-stats Public
    qiime2/q2-stats’s past year of commit activity
    Python 1 BSD-3-Clause 8 2 1 Updated Jan 8, 2025
  • q2-sample-classifier Public

    QIIME 2 plugin for machine learning prediction of sample data.

    qiime2/q2-sample-classifier’s past year of commit activity
    Python 6 BSD-3-Clause 36 15 (1 issue needs help) 0 Updated Jan 8, 2025
  • q2-quality-filter Public

    Quality filtering for QIIME2

    qiime2/q2-quality-filter’s past year of commit activity
    Python 1 BSD-3-Clause 16 3 1 Updated Jan 8, 2025
  • q2-quality-control Public

    A QIIME 2 plugin for quality control of sequence and feature data

    qiime2/q2-quality-control’s past year of commit activity
    Python 4 BSD-3-Clause 17 8 0 Updated Jan 8, 2025