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107 Open 595 Closed
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Issues list

add assembly name to the catalog
#1651 opened Jan 10, 2025 by petrelharp
QC for Gamma_B21 (MusMus) DFE QC
#1649 opened Jan 8, 2025 by petrelharp
implement genome-wide both species h-s relationship DFE from Huber et al for AraTha
#1648 opened Jan 8, 2025 by petrelharp
Do we have to review all models for specific mutation and recombination rates?
#1631 opened Dec 23, 2024 by gregorgorjanc
2
Document output format in more detail
#1624 opened Dec 20, 2024 by nspope
QC for HolsteinFriesian_1B16 (BosTau) Model QC Quality control process for model addition
#1598 opened Dec 12, 2024 by gregorgorjanc
11
Add Bos Indicus and Taurus model from Rossi et al. (2024) enhancement New feature or request
#1590 opened Nov 3, 2024 by gregorgorjanc
Document what sort of intervals contig.add_dfe expects
#1580 opened Jul 26, 2024 by nspope Version 0.2.1
@nspope
should post-SLiM simplify have keep_input_roots=True?
#1579 opened Jul 25, 2024 by petrelharp
10
Release 0.2.1 checklist enhancement New feature or request
#1565 opened Jul 1, 2024 by andrewkern
11 tasks
Version 0.2.1
4
document QC procedure for DFEs
#1557 opened Apr 16, 2024 by petrelharp
1
DFE for MusMus enhancement New feature or request
#1555 opened Mar 18, 2024 by peterdfields
10
orangutan model how to add adaptive introgression?
#1554 opened Mar 18, 2024 by h-pawar
1
Mutation model enhancement New feature or request good first issue Good for newcomers
#1546 opened Feb 16, 2024 by daikitag
1
Add detail about SLiM install to installation docs enhancement New feature or request
#1541 opened Nov 16, 2023 by hyanwong
2
What to do about shifting ensembl build?
#1521 opened Oct 10, 2023 by petrelharp Version 0.2.1
@andrewkern
11
test that requirements in setup.cfg are sufficient
#1518 opened Sep 18, 2023 by petrelharp
QC for new DFE: "generic" human DFE
#1507 opened Aug 14, 2023 by chriscrsmith Version 0.2.1
QC for LogNormalDFE (HomSap) Model QC Quality control process for model addition
#1484 opened May 18, 2023 by RyanGutenkunst Version 0.2.1
add beneficial-containing DFE
#1469 opened Apr 25, 2023 by petrelharp Version 0.2.1
@petrelharp
2
Vignette on sampling parameter values enhancement New feature or request
#1456 opened Mar 14, 2023 by RyanGutenkunst
3
add info about type of data used to demographic model descriptions enhancement New feature or request
#1442 opened Feb 17, 2023 by petrelharp
1
Unable to verify if simulation is using specified model
#1435 opened Jan 26, 2023 by sidAvad
2
test failures due to simultaneous tests trying to download AWS files
#1415 opened Nov 7, 2022 by grahamgower
AWS downloads can be slow from outside USA
#1414 opened Nov 7, 2022 by grahamgower
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