Repositories list

• stochdiff

  Public
  Stochastic diffusion simulator

  Java

  •

  GNU General Public License v2.0

  •6•7•3•1•Updated Jan 14, 2025Jan 14, 2025

• moose_nerp

  Public
  MOOSE model of the Medium Spiny Neurons and CA1 Piramidal Neurons

  Python

  •3•4•0•0•Updated Dec 23, 2024Dec 23, 2024

• D1-ERK-Model

  Public
  0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• NeuroRDanal

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• ajustador

  Public
  Adjust spspine parameters automatically

  Python

  •4•1•0•1•Updated Jun 13, 2024Jun 13, 2024

• igor

  Public
  Read Igor Pro pxp files from python

  Python

  •

  GNU Lesser General Public License v3.0

  •29•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• neurord_fit

  Public
  Python

  •1•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• cofilin

  Public
  Python

  •1•0•0•0•Updated May 13, 2024May 13, 2024

• TD2Q

  Public
  Q learning model with Q matrices representing dSPN and iSPN

  Python

  •0•0•0•0•Updated Jul 31, 2023Jul 31, 2023

• ephys_anal

  Public
  python programs for analyzing slice electrophysiology experiments

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 21, 2023Jul 21, 2023

• ShapeShifter

  Public
  Program to reduce morphology complexity

  OpenEdge ABL

  •0•1•0•0•Updated May 12, 2022May 12, 2022

• waves

  Public
  Some voltage traces

  AGS Script

  •1•0•0•0•Updated Jan 10, 2022Jan 10, 2022

• optimization_scripts

  Public
  Python

  •0•0•0•0•Updated Dec 1, 2021Dec 1, 2021

• ERK

  Public
  ERK signalling pathways model

  Batchfile

  •

  GNU General Public License v3.0

  •1•0•1•1•Updated Jul 16, 2021Jul 16, 2021

• NeuroRDViz

  Public
  Python program to display morphology and particle concentrations

  Python

  •0•2•0•0•Updated Jun 2, 2021Jun 2, 2021

• growth_cone

  Public
  Python

  •1•0•0•0•Updated Oct 21, 2020Oct 21, 2020

• synth_trains

  Public
  creation of synthetic spike trains

  Python

  •0•0•0•0•Updated Feb 13, 2020Feb 13, 2020

• moose-core

  Public
  C++ basecode and python scripting interface

  C++

  •

  GNU General Public License v3.0

  •29•0•0•0•Updated Aug 15, 2018Aug 15, 2018

• D1pathways

  Public
  striatal spiny projection neuron signaling pathway model merged from Kim et al. 2013 Gq pathways and Oliveira et al. 2012 pathways

  Batchfile

  •1•0•0•0•Updated Mar 1, 2018Mar 1, 2018

• neurord.github.com

  Public
  Parent site for neurord

  HTML

  •0•1•0•0•Updated Jul 14, 2016Jul 14, 2016

• jcp2016-examples

  Public
  Model files for the JCP2016 paper

  0•0•0•0•Updated Apr 19, 2016Apr 19, 2016

• moose-gui

  Public
  PyQt frontend (chemical signaling and neuronal simulations) for MOOSE

  Python

  •5•0•0•0•Updated Mar 1, 2016Mar 1, 2016

• nsdf

  Public
  Neuroscience Simulation Data Format

  Python

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Jan 7, 2016Jan 7, 2016

• fedora-moose

  Public
  RPM package for moose (Multiscale Neuroscience and Systems Biology Simulator)

  0•0•0•0•Updated Nov 17, 2015Nov 17, 2015

• vrnd

  Public
  GL viewer and various processors for NeuroRD results

  C++

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Oct 2, 2015Oct 2, 2015

• pysb

  Public
  Python framework for Systems Biology modeling

  Python

  •

  BSD 2-Clause "Simplified" License

  •71•0•0•0•Updated Jul 26, 2015Jul 26, 2015

• moose-old

  Public
  MOOSE simulator

  C++

  •0•0•0•0•Updated Jun 26, 2014Jun 26, 2014

• emacs-genesis-mode

  Public
  Emacs major mode for editing GENESIS neuron simulator script files.

  Emacs Lisp

  •1•0•0•0•Updated Jun 5, 2014Jun 5, 2014

• fedora-genesis-simulator

  Public
  Fedora package for the Genesis simulator

  0•0•0•0•Updated Dec 13, 2013Dec 13, 2013

• jblas

  Public
  Linear Algebra for Java

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •150•0•0•0•Updated Jan 30, 2013Jan 30, 2013