Repositories list

• SAIGE-GPU

  Public
  A GPU version of SAIGE for full GRM GWAS analysis

  R

  •1•14•5•0•Updated Nov 15, 2024Nov 15, 2024

• mvp-wgs-sv

  Public
  Python

  •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

• exascale-genomics.github.io

  Public
  Exascale Genomics tools for genome-wide population analysis

  HTML

  •0•0•0•0•Updated Oct 13, 2023Oct 13, 2023

• SAIGE-DOE

  Public
  Development for SAIGE and SAIGE-GENE(+)

  C++

  •

  GNU General Public License v3.0

  •27•0•0•0•Updated Oct 6, 2023Oct 6, 2023

• scRNASeq

  Public
  Scripts for carrying out single cell RNA-seq analysis

  Python

  •0•0•0•0•Updated Oct 1, 2023Oct 1, 2023

• PRS-dev

  Public
  Nextflow

  •1•0•0•0•Updated Aug 8, 2022Aug 8, 2022

• GenomeWorks

  Public
  SDK for GPU accelerated genome assembly and analysis

  Cuda

  •

  Apache License 2.0

  •76•0•0•0•Updated Jun 22, 2022Jun 22, 2022

• AMP_AD_StructuralVariation

  Public
  Repository for the AMP-AD structural variation manuscript

  HTML

  •

  MIT License

  •6•0•0•0•Updated Mar 14, 2022Mar 14, 2022

• pnet_prostate_paper

  Public
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery

  HTML

  •

  GNU General Public License v2.0

  •59•0•0•0•Updated Sep 22, 2021Sep 22, 2021

• SAIGE-Pre

  Public
  R

  •

  GNU Lesser General Public License v3.0

  •74•0•0•0•Updated Mar 15, 2021Mar 15, 2021

• pheweb

  Public
  A tool to build a website to browse hundreds or thousands of GWAS.

  Python

  •

  GNU Affero General Public License v3.0

  •68•0•0•0•Updated Feb 23, 2021Feb 23, 2021

• regenie

  Public
  regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

  C++

  •

  Other

  •56•0•0•0•Updated Feb 19, 2021Feb 19, 2021

• covid19-datasets

  Public
  A list of high quality open datasets for COVID-19 data analysis

  HTML

  •32•0•0•0•Updated Oct 29, 2020Oct 29, 2020