Merge pull request #100 from Daniel-VM/bump-version-2.2.0dev

Bump version 2.2.0dev
nf-core · Oct 24, 2023 · 77cab10 · 77cab10
2 parents c005ee3 + 8a24a5a
commit 77cab10
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,18 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v2.2.0dev nf-core/bacass: "Aqua Platinum Zebrafish"
+
+### `Changed`
+
+### `Added`
+
+### `Fixed`
+
+### `Dependencies`
+
+### `Deprecated`
+
 ## v2.1.0 nf-core/bacass: "Navy Steel Swordfish" - 2023/10/20
 
 This version merges the nf-core template updates of v2.9 and v2.10, and updates modules or dependencies to ensure compatibility with the new template. Additionally, new modules have been added to process short-reads and perform gene annotation with Bakta.

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/bacass/releases/tag/2.1.0" target="_blank">nf-core/bacass</a>
+  This report has been generated by the <a href="https://github.com/nf-core/bacass/releases/tag/dev" target="_blank">nf-core/bacass</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/bacass/2.1.0/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/bacass/dev/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-bacass-methods-description":
     order: -1000

diff --git a/nextflow.config b/nextflow.config
@@ -20,21 +20,21 @@ params {
     kraken2db                       = ""
 
     // Assembly parameters
-    assembler                       = 'unicycler' //allowed are unicycler, canu, miniasm
-    assembly_type                   = 'short' //allowed are short, long, hybrid (hybrid works only with Unicycler)
+    assembler                       = 'unicycler'   // Allowed: ['unicycler', 'canu', 'miniasm']
+    assembly_type                   = 'short'       // Allowed: ['short', 'long', 'hybrid'] (hybrid works only with Unicycler)
     unicycler_args                  = ""
-    canu_mode                       = '-nanopore' // allowed modes: ["-pacbio", "-nanopore", "-pacbio-hifi"]
-    canu_args                       = '' //Default no extra options, can be adjusted by the user
+    canu_mode                       = '-nanopore'   // Allowed: ['-pacbio', '-nanopore', '-pacbio-hifi']
+    canu_args                       = ''            // Default no extra options, can be adjusted by the user
 
     // Assembly polishing
     polish_method                   = 'medaka'
 
     // Annotation
-    annotation_tool                 = 'prokka' // allowed are 'prokka', 'bakta' or 'dfast'
+    annotation_tool                 = 'prokka'      // Allowed: ['prokka', 'bakta','dfast']
     prokka_args                     = ""
     baktadb                         = ''
     baktadb_download                = false
-    baktadb_download_args           = '--type light' // allowed: '--type light' or '--type full'
+    baktadb_download_args           = '--type light' // Allowed: ['--type light', '--type full']
     dfast_config                    = "$projectDir/assets/test_config_dfast.py"
 
     // Skipping options
@@ -255,7 +255,7 @@ manifest {
     description     = """Simple bacterial assembly and annotation"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '2.1.0'
+    version         = '2.2.0dev'
     doi             = '10.5281/zenodo.2669428'
 }