update formatting in comments of allowed options

nf-core · Oct 24, 2023 · 8a24a5a · 8a24a5a
1 parent 97c8afe
commit 8a24a5a
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -20,21 +20,21 @@ params {
     kraken2db                       = ""
 
     // Assembly parameters
-    assembler                       = 'unicycler' //allowed are unicycler, canu, miniasm
-    assembly_type                   = 'short' //allowed are short, long, hybrid (hybrid works only with Unicycler)
+    assembler                       = 'unicycler'   // Allowed: ['unicycler', 'canu', 'miniasm']
+    assembly_type                   = 'short'       // Allowed: ['short', 'long', 'hybrid'] (hybrid works only with Unicycler)
     unicycler_args                  = ""
-    canu_mode                       = '-nanopore' // allowed modes: ["-pacbio", "-nanopore", "-pacbio-hifi"]
-    canu_args                       = '' //Default no extra options, can be adjusted by the user
+    canu_mode                       = '-nanopore'   // Allowed: ['-pacbio', '-nanopore', '-pacbio-hifi']
+    canu_args                       = ''            // Default no extra options, can be adjusted by the user
 
     // Assembly polishing
     polish_method                   = 'medaka'
 
     // Annotation
-    annotation_tool                 = 'prokka' // allowed are 'prokka', 'bakta' or 'dfast'
+    annotation_tool                 = 'prokka'      // Allowed: ['prokka', 'bakta','dfast']
     prokka_args                     = ""
     baktadb                         = ''
     baktadb_download                = false
-    baktadb_download_args           = '--type light' // allowed: '--type light' or '--type full'
+    baktadb_download_args           = '--type light' // Allowed: ['--type light', '--type full']
     dfast_config                    = "$projectDir/assets/test_config_dfast.py"
 
     // Skipping options