updating to reference so avoid unintended column mismatch issues

nextstrain · Apr 25, 2024 · 8b1a308 · 8b1a308
1 parent d6f8330
commit 8b1a308
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Snakefile b/Snakefile
@@ -251,7 +251,7 @@ rule refine:
     input:
         tree = rules.tree.output.tree,
         alignment = rules.align.output,
-        metadata = rules.parse.output.metadata
+        metadata = metadata_by_wildcards,
     output:
         tree = "results/tree_{subtype}_{segment}_{time}.nwk",
         node_data = "results/branch-lengths_{subtype}_{segment}_{time}.json"