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updating exclude strains to remove strains with erroneous, nonsensica…
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lhmoncla committed Apr 24, 2024
1 parent 6832689 commit d6f8330
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Showing 3 changed files with 8 additions and 3 deletions.
4 changes: 3 additions & 1 deletion config/dropped_strains_h5n1.txt
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,6 @@ A/duck/China/E26/2012 # divergent
A/Fox/Bayern/WS113/2022
A/mallard/Denmark/091795/2022
A/Mallard/Netherlands/8/2023
A/kelpgull/Chile/C35523/2017
A/kelpgull/Chile/C35523/2017
A/egret/Korea/22WC603/2023
A/chicken/Poland/003/2020
4 changes: 3 additions & 1 deletion config/dropped_strains_h5nx.txt
Original file line number Diff line number Diff line change
Expand Up @@ -23,4 +23,6 @@ A/duck/China/E26/2012 # divergent
A/Fox/Bayern/WS113/2022
A/mallard/Denmark/091795/2022
A/Mallard/Netherlands/8/2023
A/kelpgull/Chile/C35523/2017
A/kelpgull/Chile/C35523/2017
A/egret/Korea/22WC603/2023
A/chicken/Poland/003/2020
3 changes: 2 additions & 1 deletion config/dropped_strains_h9n2.txt
Original file line number Diff line number Diff line change
Expand Up @@ -3,4 +3,5 @@ A/chicken/Korea/162 # this has a lot of mutations in MP
A/Bat/Egypt/381OP/2017 # this is annotated as an H9N2 on gisaid, but it is very divergent
A/Chicken/Egypt/AR541/2018 # very divergent
A/Chicken/Egypt/AR562/2018 # very divergent
A/chicken/Hunan/1217YYGK0025P/2014_Mixed
A/chicken/Hunan/1217YYGK0025P/2014_Mixed
A/environment/Wuxi/2505/2014

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