Update directory tree to SOFTX guide

.github/workflows/docs.yml

@@ -26,7 +26,7 @@ jobs:
       # ADJUST THIS: install all dependencies (including pdoc)
       - run: python -m pip install --upgrade pip
       - run: python -m pip install pdoc
-      - run: if [ -f src/requirements.txt ]; then pip install -r src/requirements.txt; fi
+      - run: if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
       - run: python -m pip install scikit-learn==1.2.2
       # ADJUST THIS: build your documentation into docs/.
       # We use a custom build script for pdoc itself, ideally you just run `pdoc -o docs/ ...` here.

.github/workflows/python-package.yml

@@ -28,7 +28,7 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         python -m pip install flake8 pytest coverage
-        pip install -r src/requirements.txt
+        pip install -r requirements.txt
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
@@ -37,7 +37,6 @@ jobs:
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
-        cd src
         coverage run -m pytest test
     # Only if ubuntu-latest
     - name: Coverage

pytest.ini

@@ -9,3 +9,4 @@ filterwarnings =
     ignore:y contains no unlabeled samples
     ignore::FutureWarning
     ignore::DeprecationWarning
+pythonpath = src

setup.cfg

@@ -0,0 +1,9 @@
+[metadata]
+description_file = README.md
+[options]
+package_dir=
+    =src
+packages=find:
+
+[options.packages.find]
+where=src