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Paleovirus Publications

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Robert J. Gifford edited this page Sep 10, 2024 · 1 revision

Gifford RJ (2012) Viral evolution in deep time - Lentiviruses and mammals. Trends in Genetics [view]

Gifford RJ, Katzourakis A, Tristem M, Pybus, OG, Winters M, and RW. Shafer. (2008) A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution. PNAS [view]

Katzourakis A, Tristem M, Pybus OG, and RJ. Gifford (2007) Discovery and analysis of the first endogenous lentivirus. PNAS [view]

Gifford RJ, Blomberg B, Coffin JM, Fan H, Heidmann T, Mayer J, Stoye J, Tristem M, and WE Johnson (2018) Nomenclature for endogenous retrovirus (ERV) loci. Retrovirology [view]

Lentivirus GLUE

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Docker Installation
  5. Native Installation
  6. Usage Overview

Lentivirus Core Project

  1. Overview
  2. Schema Extensions
  3. Core Project Data

SRLV Extension

  1. Background
  2. Project Data
  3. Genotyping Tools

EIAV Extension

  1. Background
  2. Project Data
  3. Genotyping Tools

Primate Extension

  1. Background
  2. Project Data

FIV Extension

  1. Background
  2. Project Data

Bovine Extension

  1. Background

ERV Extension

  1. Background
  2. Schema Extensions
  3. ERV Project Data

The GLUE Framework

User Guide

  1. Project Data Model
  2. Schema Extensions
  3. Modules
  4. Alignments
  5. Variations
  6. Scripting Layer
  7. Freemarker Templates

Command Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference
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