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Openmp merge#237

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cjllorente827 wants to merge 211 commits intoenzo-project:mainenzo-project/enzo-dev:mainfrom cjllorente827:openmp_mergecjllorente827/enzo-dev:openmp_mergeCopy head branch name to clipboard

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Commits

Commits on Feb 20, 2011

• No "fuzzy boundaries" for RT load balancing.

  Show description for 5dce1dc
  

  John Wise

  committed
  5dce1dc

• No "fuzzy boundaries" for RT load balancing.

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  John Wise

  committed
  9760265

Commits on Mar 10, 2011

• Empty merge. I have no idea what I did to result in this.

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  John Wise

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  083f7f0

• Changing 2 defaults.

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  John Wise

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  221e0b9

Commits on Mar 13, 2011

• If running with only Pop III SF, don't create the Metallicity field.

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  John Wise

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  21ce4f0

Commits on Mar 15, 2011

• Updated kraken compile macro for new lib locations.

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  brittonsmith

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  7af4ef8

• Merged.

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  brittonsmith

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  256d647

Commits on Mar 16, 2011

• Forgot to remove OPTIMIZED_CTP #ifdefs and #ifndefs as this was

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  John Wise

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  cebfe60

Commits on Mar 20, 2011

• fixed some constants for this test problem (thanks to Jun-Hwan Choi)

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  bwoshea

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  03f3fc9

• Added a test problem for a sedov explosion in a stratified medium.

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  bwoshea

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  a7f9a49

Commits on Mar 23, 2011

• Changing float->FLOAT to agree with grid::PrepareGrid

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  John Wise

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  a327398

• Minor optimizations to ray merging. The radius was a float instead of

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  John Wise

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  8767de9

Commits on Apr 4, 2011

• First attempt at calculating the Lyman-Werner flux using the binary

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  John Wise

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  c85c57d

• First attempt at calculating the Lyman-Werner flux using the binary

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  John Wise

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  e282207

Commits on May 13, 2011

• Added basic configuration for OpenMP. No threading yet.

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  John Wise

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  d638daf

• Threading sections that doesn't depend involve communication.

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  John Wise

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  86307fd

Commits on May 16, 2011

• Adding C++ versions for inteuler() and intvar() to avoid memory

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  John Wise

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  33142b5

Commits on Jun 1, 2011

• Ported improved euler changes to litemp version. No support for

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  John Wise

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  26b03df

• Threading FFT wrapper and potential solver (partially).

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  John Wise

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  02440ce

Commits on Jun 2, 2011

• Bringing in latest changes from week-of-code into litemp.

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  John Wise

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  b3547fc

• Threading most things except for the ray tracing in EvolvePhotons.

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  John Wise

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  8553134

Commits on Jun 3, 2011

• Finally threaded the ray tracing!!

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  John Wise

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  9c16db6

• Make the default creation time just before the start time.

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  John Wise

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  e947a91

• Don't thread the ray tracing if there are less photon packages than cores.

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  John Wise

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  aa4e02f

• Fixing a bug in the ray merging with threading.

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  John Wise

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  bfd6ed9

• Grid partitioning works for pure OpenMP runs now (use-mpi-no).

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  John Wise

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  7d1dce1

• Making the stdout consistent with the hybrid code.

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  John Wise

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  b3d3a03

Commits on Jun 5, 2011

• Removed negative color warnings temporarily

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  John Wise

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  a1ae25a

• Making the subgrid extrema parameters depend on number of cores

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  John Wise

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  52553dc

Commits on Jun 6, 2011

• Merging in latest changes from WoC.

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  John Wise

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Commits on Jun 9, 2011

• SubgridFluxStorage pointer set to NULL when the grid created.

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  John Wise

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  678a9b5

• Merging.

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  John Wise

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  c62f55e

Commits on Jun 13, 2011

• Reducing line length to 72c

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  John Wise

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  08fa981

• Merging latest changes from WoC into litemp

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  John Wise

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  ea4d903

Commits on Jun 14, 2011

• Making beamed radiation compatible with threading.

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  John Wise

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  da5661f

Commits on Jun 15, 2011

• Converting solve_rate_cool to F90. All of the temporary (shared)

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  John Wise

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  664fe3c

Commits on Jun 24, 2011

• CurrentTime needs to be adjust when merging rays. Moved speed of

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  John Wise

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  91c6d40

• Check if the run is parallel before reverting the RT load balancing.

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  John Wise

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  fdde9f0

Commits on Jun 26, 2011

• Changing grid loop in EvolveLevel to guide scheduling. Reducing size

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  John Wise

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  5128554

• Forgot about these large temp. arrays.

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  John Wise

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  bbeaefe

Commits on Jun 27, 2011

• Changing some more loops to guided scheduling. More threading in

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  John Wise

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Commits on Jun 28, 2011

• Deleting allocated GammaField.

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  John Wise

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Commits on Jul 1, 2011

• Merging latest changes in WoC into hybrid version.

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  John Wise

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  20a3b71

Commits on Jul 4, 2011

• Turn off "reset load balancing" if running serially.

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  John Wise

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  f79af7d

Commits on Jul 28, 2011

• Merging in week-of-code changes.

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  John Wise

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Commits on Aug 3, 2011

• Merging week-of-code changes into litemp

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  John Wise

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  721b517

Commits on Sep 1, 2011

• Changed scheduling to guided for LW radiation

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  John Wise

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  785d177

Commits on Sep 2, 2011

• Output position and velocity of the accreting star particle.

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  John Wise

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  7f0474f

Commits on Sep 14, 2011

• Changing some debugging positions to GOUTSYM. Allowing for small

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  John Wise

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  b1277c2

Commits on Oct 4, 2011

• Merging in latest changes from week-of-code into litemp. Compiles.

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  jwise77

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  cd38a3e

Commits on Oct 6, 2011

• Merging fix into litemp. Found more errors in my port of the dust

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  jwise77

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  3d4be8a

Commits on Oct 10, 2011

• Fixed some precision issues with the new dust cooling routines.

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  jwise77

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  33a76a5

• Giving some tolerance for the hypernova and pair-instability SN mass

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  jwise77

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  5d47dc3

Commits on Oct 19, 2011

• Precision changes for ray merging.

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  jwise77

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  71d2f53

• Precision changes for ray merging.

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  jwise77

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  4b77a1d

• Merging WoC changes into litemp

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  jwise77

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  461e112

• Precision changes for ray merging.

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  jwise77

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  fb2e07f

Commits on Oct 25, 2011

• Adding a command line option to write the dust temperature field to

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  jwise77

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  af8b9d5

• Adding a command line option to write the dust temperature field to

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  jwise77

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  6acb03a

Commits on Oct 26, 2011

• Merging

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Commits on Nov 2, 2011

• Deleting LevelArray linked list.

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  jwise77

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• Deleting the LevelArray linked list in the non-grouped datasets.

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  jwise77

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  c961442

Commits on Nov 15, 2011

• Fixing a bug that removed gas from the wrong cell after BH accretion.

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  jwise77

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  b87e5c9

Commits on Nov 17, 2011

• First pass at threading the interpolation.

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  jwise77

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• PPM Precision fixes in the C++ translation.

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  jwise77

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  da8ee8d

Commits on Nov 21, 2011

• Changing SolveForPotential to guided scheduling

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  jwise77

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  fef8739

• Merging latest changes from week-of-code.

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  jwise77

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  a12447c

Commits on Dec 16, 2011

• Merging in latest changes with litemp.

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  jwise77

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Commits on Dec 23, 2011

• Trying to thread some more of RebuildHierarchy.

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  jwise77

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  8f44e73

• Fixed recently introduced bug in threading that caused bad MPI sends.

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  jwise77

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  89f97ba

Commits on Dec 25, 2011

• More threading. CIC depositing and all fortran utilities.

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• Removed debugging statements.

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  jwise77

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Commits on Dec 26, 2011

• Merging.

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  jwise77

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Commits on Dec 28, 2011

• Making my old projection routines to have the fields weighted by

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  jwise77

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Commits on Dec 31, 2011

• Consolidating an MPI call. Avoiding an Allreduce if star_maker9 is

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  jwise77

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  fb03c9c

• Consolidating an MPI call. Avoiding an Allreduce if star_maker9 is

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  jwise77

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Commits on Jan 6, 2012

• First stab at load balancing on real compute time instead of number of

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• Adding more load balancing timers.

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  jwise77

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• Implementing a "fading memory" filter for estimating compute time for

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Commits on Jan 7, 2012

• Debugging new load balancing. Working pretty good now on small runs.

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  jwise77

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  5e4678a

Commits on Jan 8, 2012

• More debugging of CPU-time load balancing, especially during startup

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  jwise77

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Commits on Jan 13, 2012

• Optimizations in feedback sphere checking.

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  jwise77

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• More optimizations for feedback sphere for better scalability.

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  John Wise

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Commits on Jan 15, 2012

• Merging in LW (incomplete) tree calculation. Saved from April 2011.

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  jwise77

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• Lyman-Werner radiation calculation now done in a binary tree!

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  jwise77

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  6d9967b

• Lyman-Werner radiation calculation now done in a binary tree!

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  jwise77

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  b618a74

• Creating a wrapper routine to choose the tree calculation if there is

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  jwise77

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  6815992

• Creating a wrapper routine to choose the tree calculation if there is

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Commits on Jan 16, 2012

• LW tree calculation now works with star particles; optimized the tree

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  jwise77

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  edf9de1

• LW tree calculation now works with star particles; optimized the tree

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  jwise77

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• * Move up to 10k grids in one pass in load balancing.

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  John Wise

  committed
  86f1987

• Merging latest changes from week-of-code into litemp.

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  jwise77

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  0183497

• During a merge, I forgot to make this change.

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• Threading grid::CommunicationSendParticles. Useful in load balancing.

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  jwise77

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• Don't create a radiation source if there's no luminosity.

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  John Wise

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• Cleaning up logic in RT coupled solver. Also, compute the LW

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  jwise77

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• Threading moving subgrid particles from list to arrays.

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Commits on Jan 17, 2012

• Threaded moving particles from grid to move list. This wasn't trivial

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• Load balance in two stages (fields then particles) to reduce

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Commits on Jan 22, 2012

• Writing observed cost to file for restarting.

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Commits on Feb 29, 2012

• Reducing the number of MPI calls during cosmology initializations.

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Commits on Mar 7, 2012

• Level loop in RH over all levels and then check if grids exist.

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  4aee12a

• Setting the upper limit for Type II SN to 40.1, so 40 (plus a little)

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  de9f121

• When MultiSpecies is on, the colors are considered as fractional

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Commits on Mar 11, 2012

• Adding cell flaggin method to refine by metal mass.

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• Turn off star lifetime timestep limiter

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• Merging.

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Commits on Mar 13, 2012

• 10% speedup to MHD by reordering some loops

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• Merging

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Commits on Mar 22, 2012

• updating grid stuff - John's suggestion.

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Commits on Mar 23, 2012

• set up physical density threshold for star maker 2.

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• replaced some physical constants with defines in phys_constants.h (including a couple that were already there).

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• fixed omega_matter/omega_baryon kludge, because it's wrong.

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• Fixed a couple of exponentials so Enzo compiles with Cray compilers.

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• Manisha's blue waters makefiles for Cray and PGI compilers. Unchecked! BEWARE!

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• merged.

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Commits on Mar 25, 2012

• updated Grid_StarParticleHandler.C

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• merged!

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Commits on Mar 28, 2012

• Merging

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  matthewturk

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  3090eb0

Commits on Mar 29, 2012

• Looks like PyArray_ENABLEFLAGS is not available until NumPy-1.7.1.

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  matthewturk

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• Merge

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• Adding ability to read external species fields for PhotonTest.

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  jwise77

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  4d0f66e

• Adding ability to read external species fields for PhotonTest.

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• Merging

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Commits on Mar 30, 2012

• Calculate mu directly from data for initial temperature.

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  b8020be

• Calculate mu directly from data for initial temperature.

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  127f87a

• Turning off ray boundary warning.

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Commits on Apr 1, 2012

• Place a floor for external density fields.

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• Cleaning up rate solver calls in EvolvePhotons

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Commits on Apr 6, 2012

• 1. Ability to calculate X-ray flux in the optically thin limit (no

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  b76e0b7

• Extending optically-thin X-rays to stars.

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• Commented out tree-accelerated optically-thin x-rays.

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Commits on Apr 9, 2012

• Enforcing a density floor for initial density field

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  f28e984

• When using optically-thin X-rays, must solve for chem/energy for all

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• Merging

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• Decreasing critical photon flux for deletion.

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• Fixes to compile with PGI.

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• Merging

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• Merging woc heads

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  Sam Skillman

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• Merging week-of-code into litemp

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  Sam Skillman

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• Putting SSE calls in a USE_SSE define.

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• Merging

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• Merging

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  Sam Skillman

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Commits on Apr 11, 2012

• First pass at threading PPM, ffts. Also set up a switch so that level 0 and

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  samskillman

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  0ceab2e

Commits on Apr 14, 2012

• Changes to scheduling. Writing # of cores / MPI in Evtime. Adding

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  John Wise

  committed
  e42255b

• Merge

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  John Wise

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• Don't include SN feedback outside the refine region.

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  John Wise

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Commits on Apr 15, 2012

• Modifying some openmp stuff, turning of threading of RH for now.

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  b890fc4

• Merging in enzo-bluewaters fork

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• merging woc heads

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• Merging in woc to litemp

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Commits on Apr 16, 2012

• This was merged incorrectly. Fixes the ReadGhostZones issue again.

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Commits on May 1, 2012

• Need OPENMP defines to compile without openmp.

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• Merging litemp branches from my enzo-dev and openmp forks.

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  ae02118

• Merging latest changes from week-of-code into litemp.

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  743d9d8

• Merging litemp branches

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  eac8855

• Removing star lifetime restriction for timestep.

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• Merging in some more changes I forgot on the GT cluster.

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Commits on May 2, 2012

• Use RadiationFieldRedshift for Compton cooling/heating.

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Commits on May 9, 2012

• Fixing continuation for openmp

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  samskillman

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• Threading a few more routines.

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• adding omp master directives to timing

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  2f92bc3

• removing collapse(3) from utilities that was causing a segfault

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Commits on May 14, 2012

• Modifying collapse statements which led to race conditions, I think. Also added timing to communication calls.

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Commits on Jul 30, 2012

• Adding a new radiative transfer parameter that limits the timestep

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Commits on Jul 31, 2012

• Re-merging, this time correctly.

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  Sam Skillman

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• Needed to include some .defs

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  Sam Skillman

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Commits on Aug 6, 2012

• Removing parallel region from grid_cic.

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  jwise77

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  a5365aa

• Moving 50% timestep increase restriction to high density chemistry.

  Show description for e0eeb24
  jwise77

  committed
  e0eeb24

• Merging.

  Show description for b2b48e0
  jwise77

  committed
  b2b48e0

Commits on Nov 15, 2012

• Minor fixes to the Pop III accretion sphere and chemistry/energy

  Show description for 2a4f9c0
  jwise77

  committed
  2a4f9c0

• Merging litemp heads.

  Show description for 02cd28b
  jwise77

  committed
  02cd28b

Commits on Dec 3, 2012

• Merging in an intermediate changeset from the main branch

  Show description for df752e6
  

  Sam Skillman

  committed
  df752e6

• Attempt to merge to tip.

  Show description for 746738c
  

  Sam Skillman

  committed
  746738c

• Fixing from a not-completely successful merge, with help from Dan on solve_rate_cool.F90.

  Show description for 35b84cd
  

  Sam Skillman

  committed
  35b84cd

Commits on Dec 4, 2012

• Fixing bugs with grid_cic.F90 conversion, solve_rate_cool, and fixing compilation

  Show description for 32032bf
  

  Sam Skillman

  committed
  32032bf

• Removing grid_cic.F

  Show description for 06fdf4a
  

  Sam Skillman

  committed
  06fdf4a

Commits on Dec 5, 2012

• Merging swskillman's openmp changes and merge from the mainline into

  Show description for 49beedc
  jwise77

  committed
  49beedc

• Fixing merge conflict.

  Show description for 22c8fc6
  jwise77

  committed
  22c8fc6

Commits on Dec 6, 2012

• Changing some leftover FORTRAN logicals to LOGIC_PREC.

  Show description for 8ce36ae
  jwise77

  committed
  8ce36ae

• Reverting some changes that I made in the litemp branch, attempting to

  Show description for bae30f8
  jwise77

  committed
  bae30f8

• Removed extra argument in the call to solve_cool.F, causing errors in

  Show description for 8ae89d9
  jwise77

  committed
  8ae89d9

Commits on Dec 23, 2012

• Merging in Dave's acceleration fix.

  Show description for 6a7f45d
  jwise77

  committed
  6a7f45d

• Merging latest changes from week-of-code into litemp branch.

  Show description for 26f0c77
  jwise77

  committed
  26f0c77

Commits on Jan 2, 2013

• Don't add NULL subgrid markers from parent grids. Fixes a segfault.

  Show description for 1effd5a
  jwise77

  committed
  1effd5a

• Expanding the load balancing timers to accommodate multiple timers.

  Show description for dc1d0fa
  jwise77

  committed
  dc1d0fa

• Some things that were overlooked when expanding the load balancing

  Show description for a8f1ae4
  jwise77

  committed
  a8f1ae4

Commits on Jan 4, 2013

• RaySegments should not be interpolated and should be zeroed out in

  Show description for 999fbc5
  jwise77

  committed
  999fbc5

• Adding EnzoTimers to EvolvePhotons and grid::TransportPhotons.

  Show description for 000372e
  jwise77

  committed
  000372e

• Fixing a long-standing bug where a photon was orphaned when the

  Show description for 84dc9ad
  jwise77

  committed
  84dc9ad

Commits on Jan 15, 2017

• Adding openmp flags to BW machine file. Removing cic_deposit omp

  Show description for c88ad21
  jwise77

  committed
  c88ad21

Commits on Sep 24, 2017

• Moved cic_deposit omp section to PrepareDensityField

  Show description for ed97652
  

  CJ Llorente

  committed
  ed97652

Commits on Jan 28, 2018

• Moved openmp sections to top level loops (iterating over grids)

  Show description for c4bd7d8
  

  CJ Llorente

  committed
  c4bd7d8

Commits on Feb 12, 2018

• Added condition for Interpolate to detect if it is running serially

  Show description for c213e45
  

  CJ Llorente

  committed
  c213e45

Commits on Mar 15, 2018

• OpenMP implementation of interpolation

  Show description for cbfec22
  

  cjllorente

  committed
  cbfec22

Commits on Mar 16, 2018

• Added comment to xeonphi makefile

  Show description for 8ca301b
  

  cjllorente

  committed
  8ca301b

Commits on May 16, 2018

• Cleaning up debug statements, added some more debugging to CommunicationInitialize.C

  Show description for 70ba576
  

  cjllorente

  committed
  70ba576

Commits on May 27, 2019

• Patching in last few changes

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  cjllorente

  committed
  3463101

Commits on Jul 2, 2020

• added the AGN particle files

  

  Deovrat Deovrat

  committed
  277c0a8

• rmoved merge conflicts

  

  Deovrat Deovrat

  committed
  48c06a7

Commits on Jul 7, 2020

• removed merge conflicts

  

  Deovrat Deovrat

  committed
  5ccc990

Commits on Sep 24, 2021

• Active particlee-AGNParticle

  DeovratPrasad

  committed
  76026f4

Commits on Jan 7, 2022

• test commit

  DeovratPrasad

  committed
  a7fdbd7

Commits on Jan 20, 2022

• modified how AGN particle is introduced in the domain.

  DeovratPrasad

  committed
  b5d1332

Commits on Sep 21, 2022

• Cleaned up AGN particle creation routine

  bigtoasty

  committed
  a4ff7c5

Commits on Nov 18, 2022

• Added fixes that require static analysis

  bigtoasty

  committed
  d9987ec

Commits on Jan 31, 2023

• Particle will now spawn on highest subgrid that matches its position

  bigtoasty

  committed
  d27a9b2

Commits on May 26, 2023

• many changes

  bigtoasty

  committed
  11b6a2c

Commits on Jan 22, 2024

• last few bug fixes

  bigtoasty

  committed
  2da6ae9

Commits on Jan 29, 2024

• merge with cosmo_fix

  cjllorente827

  committed
  3accce0

• Merging openmp branch

  cjllorente827

  committed
  2517111