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Release version 4.0-beta8
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bredelings committed Dec 19, 2023
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17 changes: 14 additions & 3 deletions NEWS
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* 4.0-beta8 (unreleased)
* 4.0-beta8 (Dec 19, 2023)
- Usability tweaks
+ Write out tree with branch-lengths scaled according to weighted average of partition scales.
+ Print the alignment length including fixed-alignment partitions.
- Phylogenetics
+ Update likelihoods and other infrastructure to handle multifurcating trees.
+ Update likelihoods and other infrastructure to handle data on internal nodes.
+ Compute CLVs for observed sequences.

* 4.0-beta7 (Nor 1, 2023)
+ Allow tips with no observed sequences.
+ Stop special-casing 1-node and 2-node trees.
- Tools
* Add benchmarking script benchmark.py
- Fixes
* Don't allocate new memory in matrix::operator=( ) if we don't have to.
* Test letter_mask, not letter fmask!
* Correctly handle ASR for 1-node and 2-node trees.
* Fix matrix transpose.
- Testing
* Re-enable the sanitizer test.

* 4.0-beta7 (Nov 1, 2023)
- Bug fixes:
+ Allow estimating the alignment with a fixed topology.
- Don't crash trying NNI on fixed tree.
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2 changes: 1 addition & 1 deletion meson.build
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project('bali-phy', ['cpp','c'],
version: '4.0-beta8-preview',
version: '4.0-beta8',
default_options : [
'cpp_std=c++20',
'warning_level=3',
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