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Start generalizing default declarations for NamedDefaults
Build and test #2344: Commit 6654dc7 pushed by bredelings
January 9, 2025 02:13 28m 0s master
January 9, 2025 02:13 28m 0s
Add multiFrequencyCovarion' to take a distribution on letters.
Build and test #2343: Commit 21ec043 pushed by bredelings
January 5, 2025 04:06 23m 44s master
January 5, 2025 04:06 23m 44s
Add notes about rate scaling for multifreq+covarion.
Build and test #2342: Commit 4799256 pushed by bredelings
January 5, 2025 01:42 30m 50s master
January 5, 2025 01:42 30m 50s
Add note to function geometric
Build and test #2341: Commit 6416e14 pushed by bredelings
January 4, 2025 03:44 38m 57s master
January 4, 2025 03:44 38m 57s
Make the peel_leaf_branch_toward_root( ) code handle both cases.
Build and test #2340: Commit e4d3dc4 pushed by bredelings
January 2, 2025 19:20 33m 21s master
January 2, 2025 19:20 33m 21s
Handle sparse likelihoods.
Build and test #2339: Commit 4fa50da pushed by bredelings
January 2, 2025 18:32 17m 55s master
January 2, 2025 18:32 17m 55s
Implement speedup for sparse CLVs.
Build and test #2338: Commit 9cee71d pushed by bredelings
January 2, 2025 06:15 6m 13s master
January 2, 2025 06:15 6m 13s
Update meson build files for deprecations.
Build and test #2337: Commit 6366d5f pushed by bredelings
January 2, 2025 03:47 30s 3.6
3.6
January 2, 2025 03:47 30s
Remove using std::bitset
Build and test #2336: Commit 957d3bd pushed by bredelings
January 2, 2025 03:42 33s 3.6
3.6
January 2, 2025 03:42 33s
Implement speedup for sparse CLVs.
Build and test #2335: Commit 9cee71d pushed by bredelings
January 2, 2025 02:28 7m 26s sparse-likelihoods
January 2, 2025 02:28 7m 26s
Synchronize fixed-A and variable-A versions of peel_leaf_branch*
Build and test #2334: Commit f9c0f3e pushed by bredelings
January 2, 2025 02:19 6m 27s sparse-likelihoods
January 2, 2025 02:19 6m 27s
Fix serialization of Box<json::value> with boost 1.87
Build and test #2333: Commit e32db27 pushed by bredelings
January 1, 2025 21:57 29m 11s sparse-likelihoods
January 1, 2025 21:57 29m 11s
Remove all occurrences of using namespace boost.
Build and test #2332: Commit 31261d7 pushed by bredelings
January 1, 2025 21:48 4m 41s sparse-likelihoods
January 1, 2025 21:48 4m 41s
Don't forget to install boost.
Build and test #2331: Commit 1cd8d4e pushed by bredelings
January 1, 2025 21:19 6m 36s sparse-likelihoods
January 1, 2025 21:19 6m 36s
Update boost locations.
Build and test #2330: Commit d50ff82 pushed by bredelings
January 1, 2025 21:14 2m 47s sparse-likelihoods
January 1, 2025 21:14 2m 47s
Handle SparseLikelihoods.
Build and test #2329: Commit a4e24da pushed by bredelings
January 1, 2025 20:56 1m 35s sparse-likelihoods
January 1, 2025 20:56 1m 35s
Add function emptyAttributes
Build and test #2328: Commit fd2325c pushed by bredelings
January 1, 2025 20:54 1m 37s sparse-likelihoods
January 1, 2025 20:54 1m 37s
Add dirichlet_on( ).
Build and test #2327: Commit 862af7f pushed by bredelings
January 1, 2025 04:25 1m 38s master
January 1, 2025 04:25 1m 38s
Tweak help for busted and busted_s.
Build and test #2326: Commit 3392b0b pushed by bredelings
December 31, 2024 20:53 28m 34s master
December 31, 2024 20:53 28m 34s
Don't extract terms with lambda binder variables.
Build and test #2325: Commit fc65560 pushed by bredelings
December 31, 2024 18:48 38m 5s master
December 31, 2024 18:48 38m 5s
Mention MNM mutation models.
Build and test #2324: Commit d353cc0 pushed by bredelings
December 31, 2024 04:19 39m 56s master
December 31, 2024 04:19 39m 56s
Improve multi_freq model.
Build and test #2323: Commit c4e8114 pushed by bredelings
December 31, 2024 00:51 38m 52s master
December 31, 2024 00:51 38m 52s
Add notes about implementing CSE.
Build and test #2322: Commit 3480744 pushed by bredelings
December 30, 2024 19:59 16m 32s master
December 30, 2024 19:59 16m 32s
Fix for older clang.
Build and test #2321: Commit 7b5627a pushed by bredelings
December 29, 2024 07:26 30m 32s master
December 29, 2024 07:26 30m 32s
Use the class name as the constructor name for dictionaries.
Build and test #2320: Commit fa4c3cb pushed by bredelings
December 29, 2024 07:13 10m 42s master
December 29, 2024 07:13 10m 42s