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quick fixes #153

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Oct 1, 2024
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quick fixes #153

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3246c4d
quick fixes
charles-cowart Sep 19, 2024
154d811
Removed unneeded change
charles-cowart Oct 1, 2024
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3 changes: 3 additions & 0 deletions sequence_processing_pipeline/Job.py
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Original file line number Diff line number Diff line change
Expand Up @@ -226,6 +226,9 @@ def wait_on_job_ids(self, job_ids, callback=None):
# them before returning, optionally submitting callbacks for each
# job-id.

# ensure all ids are strings to ensure proper working w/join().
job_ids = [str(x) for x in job_ids]
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What edge case caused problems here?

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I once passed in a list of job-ids that had been converted to int()s in the process of error checking and it made the entire job fail because of a downstream str.join(). IMHO this is prudent as there's nothing else checking the input parameters for this method and this kind of error is the kind that can be hard to debug for some down the road. Moreover because it uses a list comprehension it should be pretty cheap.


def query_slurm(job_ids):
# internal function query_slurm encapsulates the handling of
# squeue.
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