Daily update data #676

	name: Daily update data
	on:
	schedule:
	- cron: '0 14 * * *'
	workflow_dispatch:

	jobs:
	update-data:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout source code
	uses: actions/checkout@v3

	- name: Setup python
	uses: actions/setup-python@v4
	with:
	python-version: '3.9'
	cache: 'pip'
	cache-dependency-path: '.github/env/requirements.txt'

	- name: Install dependencies
	run: \|
	sudo apt-get update -qq
	sudo apt-get install libkrb5-dev
	python -m pip install --upgrade pip
	pip install -r .github/env/requirements.txt

	- name: Update sequences
	run: \|
	python .github/scripts/update_seqs.py

	- name: Update cases
	continue-on-error: true
	run: \|
	python .github/scripts/update_cases.py

	- name: Save new cases
	uses: actions/upload-artifact@v3
	with:
	name: NewCases
	path: new_cases.csv

	- name: Verify Changed files
	uses: tj-actions/verify-changed-files@v13
	id: verify-changed-files
	with:
	files: \|
	resources/sequences.csv
	resources/cases.csv

	- name: Update growth rates
	run: \|
	python .github/scripts/update_growth_rates.py

	- name: Commit changed files
	if: steps.verify-changed-files.outputs.files_changed == 'true'
	run: \|
	git config --global user.name 'watronfire'
	git config --global user.email '[email protected]'
	git commit -am "Automated update of cases and sequences on $(date +'%Y-%m-%d')"
	git push

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