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@andersen-lab

Andersen Laboratory @ Scripps Research

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  1. HCoV-19-Genomics HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    15 5

  2. ivar ivar Public

    Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    C++ 119 42

  3. Freyja Freyja Public

    Depth-weighted De-Mixing

    HTML 107 31

  4. avian-influenza avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    Shell 28 7

  5. MPXV_wastewater_sequencing MPXV_wastewater_sequencing Public

    Python

Repositories

Showing 10 of 57 repositories
  • Freyja Public

    Depth-weighted De-Mixing

    andersen-lab/Freyja’s past year of commit activity
    HTML 107 BSD-2-Clause 31 9 2 Updated Jan 20, 2025
  • avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    andersen-lab/avian-influenza’s past year of commit activity
    Shell 28 7 2 0 Updated Jan 19, 2025
  • Freyja-data Public

    Previous versions of Freyja barcodes and metadata files

    andersen-lab/Freyja-data’s past year of commit activity
    Python 4 0 0 0 Updated Jan 18, 2025
  • ivar Public Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    andersen-lab/ivar’s past year of commit activity
    C++ 119 GPL-3.0 44 43 10 Updated Jan 17, 2025
  • Freyja-nf Public Forked from andersen-lab/Freyja-SRA

    nextflow pipeline for NICD wastewater surveillance

    andersen-lab/Freyja-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 3 0 0 Updated Jan 15, 2025
  • Freyja-SRA Public
    andersen-lab/Freyja-SRA’s past year of commit activity
    Python 4 GPL-3.0 3 0 0 Updated Jan 15, 2025
  • Freyja-barcodes Public
    andersen-lab/Freyja-barcodes’s past year of commit activity
    HTML 6 BSD-2-Clause 0 1 1 Updated Jan 14, 2025
  • SARS-CoV-2_WasteWater_San-Diego Public
    andersen-lab/SARS-CoV-2_WasteWater_San-Diego’s past year of commit activity
    Python 12 3 0 0 Updated Jan 14, 2025
  • sd_ww_processing Public

    repo for data storage and shared analyses

    andersen-lab/sd_ww_processing’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2025
  • HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    andersen-lab/HCoV-19-Genomics’s past year of commit activity
    15 5 2 0 Updated Jan 7, 2025
View all repositories

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