update dockerfile for macos and update github workflow for config aux…

… files
andersen-lab · Jun 17, 2024 · be4aabc · be4aabc
1 parent cccb744
commit be4aabc
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Showing 2 changed files with 8 additions and 5 deletions.
diff --git a/.github/workflows/ccpp.yml b/.github/workflows/ccpp.yml
@@ -75,6 +75,9 @@ jobs:
     - name: install htslib
       run: |
         cd htslib-1.10.2/
+        curl -O http://git.savannah.gnu.org/cgit/config.git/plain/config.sub
+        curl -O http://git.savannah.gnu.org/cgit/config.git/plain/config.guess
+        chmod +x config.guess config.sub
         autoheader
         autoconf
         ./configure

diff --git a/Dockerfile b/Dockerfile
@@ -34,12 +34,12 @@ RUN cd root/ &&\
     make install
 # bwa
 RUN cd root/ &&\
-    wget https://github.com/lh3/bwa/archive/v0.7.17.tar.gz &&\
-    tar xvf v0.7.17.tar.gz &&\
-    cd bwa-0.7.17/ &&\
+    wget https://github.com/lh3/bwa/archive/v0.7.18.tar.gz &&\
+    tar xvf v0.7.18.tar.gz &&\
+    cd bwa-0.7.18/ &&\
     make &&\
     cd ../ &&\
-    rm v0.7.17.tar.gz
-ENV PATH /root/bwa-0.7.17:$PATH
+    rm v0.7.18.tar.gz
+ENV PATH /root/bwa-0.7.18:$PATH
 # Snakemake
 RUN pip3 install pandas snakemake