changing type of int for check pos exists

andersen-lab · Dec 13, 2023 · af8c4b7 · af8c4b7
1 parent b945eb4
commit af8c4b7
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/src/allele_functions.cpp b/src/allele_functions.cpp
@@ -61,10 +61,10 @@ void position::update_alleles(std::string nt, uint32_t count){
 int check_position_exists(uint32_t p, std::vector<position> positions) {
   for (uint32_t i=0; i < positions.size(); i++) {
     if (p == positions[i].pos) {
-      return(i);
+      return((int)i);
     }
   }
-  return(0);
+  return(-1);
 }
 
 int find_ref_in_allele(std::vector<allele> ad, char ref) {

diff --git a/src/interval_tree.cpp b/src/interval_tree.cpp
@@ -29,9 +29,9 @@ std::vector<allele> add_allele_vectors(std::vector<allele> new_alleles, std::vec
 void IntervalTree::combine_haplotypes(ITNode *root){
   if (root==NULL) return;
   for(uint32_t i=0; i < root->amp_positions.size(); i++){
-    uint32_t exists = check_position_exists(root->amp_positions[i].pos, variants);
+    int exists = check_position_exists(root->amp_positions[i].pos, variants);
     //does exist
-    if (exists){
+    if (exists != -1){
       variants[exists].depth += root->amp_positions[i].depth;
       std::vector<allele> new_alleles = add_allele_vectors(root->amp_positions[i].alleles, variants[exists].alleles);
       variants[exists].alleles = new_alleles;