Fix ivar filtervariants
error
#272
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name: C/C++ CI | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
jobs: | |
build-linux: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-20.04] | |
steps: | |
- uses: actions/checkout@master | |
- name: download htslib | |
run: | | |
wget https://github.com/samtools/htslib/archive/1.10.2.tar.gz | |
sudo apt-get install gcc-7 | |
- name: untar | |
run: tar xf 1.10.2.tar.gz | |
- name: install htslib | |
env: | |
CC: gcc-7 | |
run: | | |
cd htslib-1.10.2/ | |
autoheader | |
autoconf | |
./configure | |
make | |
sudo make install | |
sudo ldconfig | |
- name: autotools | |
env: | |
CC: gcc-7 | |
run: ./autogen.sh | |
- name: configure | |
env: | |
CC: gcc-7 | |
run: ./configure | |
- name: make | |
env: | |
CC: gcc-7 | |
run: make | |
- name: make check | |
env: | |
CC: gcc-7 | |
run: make check | |
- name: make install | |
env: | |
CC: gcc-7 | |
run: sudo make install | |
build-macos: | |
runs-on: [ macos-14 ] | |
steps: | |
- uses: actions/checkout@master | |
- name: install GNU autotools | |
run: | | |
brew install autoconf automake libtool | |
- name: download htslib | |
run: wget https://github.com/samtools/htslib/releases/download/1.12/htslib-1.12.tar.bz2 | |
- name: untar | |
run: tar xf htslib-1.12.tar.bz2 | |
- name: install htslib | |
run: | | |
cd htslib-1.12/ | |
autoreconf -i | |
./configure | |
make | |
sudo make install | |
- name: autoconf | |
run: ./autogen.sh | |
- name: configure | |
run: ./configure | |
- name: make | |
run: make | |
- name: make check | |
run: make check | |
- name: make install | |
run: sudo make install |