Merge pull request #265 from andersen-lab/h5n1-cattle-barcodes

update pathogen config to include H5N1 cattle barcodes
andersen-lab · Dec 20, 2024 · f855575 · f855575
2 parents c01c054 + fe2a1d1
commit f855575
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/freyja/data/pathogen_config.yml b/freyja/data/pathogen_config.yml
@@ -7,6 +7,11 @@ H5NX:
  - name: "H5Nx"
    barcodes: "https://raw.githubusercontent.com/andersen-lab/Freyja-barcodes/refs/heads/main/H5Nx/latest/barcode.csv"
 
+H5NX-cattle:
+  - name: "H5Nx-cattle"
+    barcodes: "https://raw.githubusercontent.com/andersen-lab/Freyja-barcodes/refs/heads/main/H5Nx-cattle/latest/barcode.csv"
+    lineageyml: "https://raw.githubusercontent.com/andersen-lab/Freyja-barcodes/refs/heads/main/H5Nx-cattle/latest/h5nx_cattle_lineages.yml"
+
 H1N1pdm:
  - name: "H1N1"
    barcodes: "https://raw.githubusercontent.com/andersen-lab/Freyja-barcodes/refs/heads/main/H1N1/latest/barcode.csv"