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905 Open 1,170 Closed
905 Open 1,170 Closed
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Issues list

25% of reads too short Unmapped in SmartSeq2
#2261 opened Dec 28, 2024 by Rohit-Satyam
1
sambamba flagstat issues in STARsolo
#2260 opened Dec 24, 2024 by onmyojiyys
Splicing Analysis based on STAR quantifications
#2259 opened Dec 19, 2024 by andrebolerbarros
1
v2.7.11b: Segmentation fault in ReadAlign::writeSAM (ReadAlign_outputAlignments.cpp:174)
#2258 opened Dec 18, 2024 by rowanworth
Alignment to mm10 reference genome, the alignment speed extremely slow for one single thread particularly.
#2256 opened Dec 16, 2024 by gongyuTang123
ReadAlignChunk_processChunks.cpp:202:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or >
#2255 opened Dec 16, 2024 by 2061574124
Inquiry about Chimeric Junction Identification in scRNA-seq Data Analysis
#2254 opened Dec 13, 2024 by luojinqin
Missing reads in Transcriptome BAM file when using --quantMode TranscriptomeSAM
#2253 opened Dec 12, 2024 by suzietallon
how to enable clipping on 5'- and 3'- end with no penalty
#2252 opened Dec 11, 2024 by sotuamax
Alternative diagnosis & solution for: FATAL ERROR: could not open genome file STARgenomeIndex/genomeParameters.txt
#2251 opened Dec 10, 2024 by anderswe
GeneFull_ExonOverIntron - Error of segmentation (core dumped) "${cmd}" "$@"
#2250 opened Dec 5, 2024 by wjbsb
Huge difference in mapping rates between two mouse tissues?
#2249 opened Dec 2, 2024 by jdrnevich
1
Strange behaviour of the percentages of unmapped reads when mapping to highly repetitive regions
#2248 opened Dec 2, 2024 by nikitin-p
GeneFull Mapping Discrepancy
#2247 opened Nov 27, 2024 by mattg478
STARsolo and Cellranger (v8) differences in estimating number of cells
#2245 opened Nov 21, 2024 by angelasanzo
Add RG ID to cell barcodes
#2244 opened Nov 20, 2024 by drneavin
How to include the lane index in STARsolo count matrix barcodes.tsv?
#2243 opened Nov 19, 2024 by mkarikom
How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
#2241 opened Nov 14, 2024 by mkarikom
Velocyto question
#2239 opened Nov 13, 2024 by Liripo
1
STARsolo settings for SMART-seq3
#2238 opened Nov 7, 2024 by apredeus
What's the difference between "outSAMstrandField" and "outFilterIntronMotifs RemoveNoncanonical"
#2237 opened Nov 7, 2024 by hungweichen0327
Multi Mapping Loci Meaning
#2236 opened Nov 6, 2024 by mattg478
Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other Solutions?
#2235 opened Nov 5, 2024 by Vijithkumar2020
Custom refgen generation (scRNA)
#2234 opened Nov 5, 2024 by radiasso
Indexing transcriptome bam file
#2233 opened Nov 2, 2024 by aayushraman
ProTip! Exclude everything labeled bug with -label:bug.