You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
ReadAlignChunk_processChunks.cpp:202:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or >
#2255
Open
2061574124 opened this issue
Dec 16, 2024
· 0 comments
the code:
STAR --runThreadN 30 --genomeDir /home/dell/database/hg38/index --readFilesIn /home/dell/TH/id58_1.fastq.gz /home/dell/TH/id58_2.fastq.gz --outFileNamePrefix /home/dell/TH/id58 --outSAMtype BAM SortedByCoordinate
**_STAR version: 2.7.9a compiled: 2021-05-04T09:43:56-0400 vega:/home/dobin/data/STAR/STARcode/STAR.master/source
Dec 16 21:01:28 ..... started STAR run
Dec 16 21:01:28 ..... loading genome
Dec 16 21:01:54 ..... started mapping
ReadAlignChunk_processChunks.cpp:202:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or >
Dec 16 21:01:56 ...... FATAL ERROR, exiting_**
and the head of fastq.gz just like:
head /home/dell/TH/id58_1.fastp.fastq
@id58.1 1/1
GTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAGAGGGAGCTGACGGATGACGCCCCCGCGCCACGCCGCTCAGCGGGATACGCTTCTTGGCGGACT
+
-AAFFJFJJJJJJJJJJFFJJJJJJ<JJJJJJJFFJJJAJJJ-FJJJJ<FJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJF
@id58.2 2/1
TGTCTCTCAGGCTCTAAACAATTTCCAGCCCAAACCACAGCACCATCCTGATGAAAAGGGCCAGATATTAAGACAGCTGTTAGGCAGTTAACCTGTAATTA
+
--AFFA7FJJJJFJJJJJJJJJJJJJJJJJJJFJJFFJ<F--AFJJJJJJJJJJJJJJJFJJJJFFJJJFJJAJFA<JJJJJJJJJJJJJJJJJJJJFJJJ
@id58.3 3/1
GGAGACGACACAGTAATGCTGAAAAAGCCTCTATGTAGTCCTGTTAGTGTCTTAAAGAACCTAAAAGCTGGGACCAGTAAAATCCACAGAAATTCACTCTT
The text was updated successfully, but these errors were encountered:
the code:
STAR --runThreadN 30 --genomeDir /home/dell/database/hg38/index --readFilesIn /home/dell/TH/id58_1.fastq.gz /home/dell/TH/id58_2.fastq.gz --outFileNamePrefix /home/dell/TH/id58 --outSAMtype BAM SortedByCoordinate
**_STAR version: 2.7.9a compiled: 2021-05-04T09:43:56-0400 vega:/home/dobin/data/STAR/STARcode/STAR.master/source
Dec 16 21:01:28 ..... started STAR run
Dec 16 21:01:28 ..... loading genome
Dec 16 21:01:54 ..... started mapping
ReadAlignChunk_processChunks.cpp:202:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or >
Dec 16 21:01:56 ...... FATAL ERROR, exiting_**
and the head of fastq.gz just like:
head /home/dell/TH/id58_1.fastp.fastq
@id58.1 1/1
GTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAGAGGGAGCTGACGGATGACGCCCCCGCGCCACGCCGCTCAGCGGGATACGCTTCTTGGCGGACT
+
-AAFFJFJJJJJJJJJJFFJJJJJJ<JJJJJJJFFJJJAJJJ-FJJJJ<FJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJF
@id58.2 2/1
TGTCTCTCAGGCTCTAAACAATTTCCAGCCCAAACCACAGCACCATCCTGATGAAAAGGGCCAGATATTAAGACAGCTGTTAGGCAGTTAACCTGTAATTA
+
--AFFA7FJJJJFJJJJJJJJJJJJJJJJJJJFJJFFJ<F--AFJJJJJJJJJJJJJJJFJJJJFFJJJFJJAJFA<JJJJJJJJJJJJJJJJJJJJFJJJ
@id58.3 3/1
GGAGACGACACAGTAATGCTGAAAAAGCCTCTATGTAGTCCTGTTAGTGTCTTAAAGAACCTAAAAGCTGGGACCAGTAAAATCCACAGAAATTCACTCTT
The text was updated successfully, but these errors were encountered: