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ReadAlignChunk_processChunks.cpp:202:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or > #2255

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2061574124 opened this issue Dec 16, 2024 · 0 comments

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@2061574124
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the code:
STAR --runThreadN 30 --genomeDir /home/dell/database/hg38/index --readFilesIn /home/dell/TH/id58_1.fastq.gz /home/dell/TH/id58_2.fastq.gz --outFileNamePrefix /home/dell/TH/id58 --outSAMtype BAM SortedByCoordinate

**_STAR version: 2.7.9a compiled: 2021-05-04T09:43:56-0400 vega:/home/dobin/data/STAR/STARcode/STAR.master/source
Dec 16 21:01:28 ..... started STAR run
Dec 16 21:01:28 ..... loading genome
Dec 16 21:01:54 ..... started mapping

ReadAlignChunk_processChunks.cpp:202:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or >

Dec 16 21:01:56 ...... FATAL ERROR, exiting_**

and the head of fastq.gz just like:
head /home/dell/TH/id58_1.fastp.fastq
@id58.1 1/1
GTGGTTGGTGCGCGGACACGCACTGCCTGCGTAACTAGAGGGAGCTGACGGATGACGCCCCCGCGCCACGCCGCTCAGCGGGATACGCTTCTTGGCGGACT
+
-AAFFJFJJJJJJJJJJFFJJJJJJ<JJJJJJJFFJJJAJJJ-FJJJJ<FJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJF
@id58.2 2/1
TGTCTCTCAGGCTCTAAACAATTTCCAGCCCAAACCACAGCACCATCCTGATGAAAAGGGCCAGATATTAAGACAGCTGTTAGGCAGTTAACCTGTAATTA
+
--AFFA7FJJJJFJJJJJJJJJJJJJJJJJJJFJJFFJ<F--AFJJJJJJJJJJJJJJJFJJJJFFJJJFJJAJFA<JJJJJJJJJJJJJJJJJJJJFJJJ
@id58.3 3/1
GGAGACGACACAGTAATGCTGAAAAAGCCTCTATGTAGTCCTGTTAGTGTCTTAAAGAACCTAAAAGCTGGGACCAGTAAAATCCACAGAAATTCACTCTT

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