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XingTang2014/AffyArrayPipeline
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###--------------------------------------------------------------------------------------------------------------------- ### Affy + limma + GOstat pipeline for analysing affymetrix expression array data. ### 06/25/2015 Xing Tang, The Ohio State University Comprehensive Cancer Center ### [email protected] ###--------------------------------------------------------------------------------------------------------------------- How to use this pipeline? 1. customize you parameters by modifying sample_desc.txt file 2. type "Rscript do_rma_limma_GO.R" to get the results 3. check results/ folder. Four tables are generated. a. AllExp.xls: log2 signal generated by rma function from affy b. DEG.xls: differential expression analysis results from limma c. GO.xls: enriched GO terms from GOstat package *Note 1. you have to modify the do_rma_limma_GO.R scripts to fit the pipeline to multiple groups comparison
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pipeline for analysing affymetrix expression array data.
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