Skip to content

Commit

Permalink
Tweak sedml
Browse files Browse the repository at this point in the history
  • Loading branch information
pgleeson committed Nov 27, 2024
1 parent 54595e9 commit 826f4c2
Show file tree
Hide file tree
Showing 3 changed files with 11 additions and 3 deletions.
1 change: 1 addition & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -14,3 +14,4 @@ TestNet.net.png
/BallAndStick.cell.svg
/TestNet.net.svg
/x86_64
/SBML/*.pdf
2 changes: 1 addition & 1 deletion LEMS_SimTestNet.xml
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

<!--
This LEMS file has been automatically generated using PyNeuroML v1.3.12 (libNeuroML v0.6.5)
This LEMS file has been automatically generated using PyNeuroML v1.3.12 (libNeuroML v0.6.6)
-->

Expand Down
11 changes: 9 additions & 2 deletions SBML/BIOMD0000000138_url.sedml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<model id="BIOMD0000000138_url" language="urn:sedml:language:sbml" source="BIOMD0000000138_url.xml"/>
</listOfModels>
<listOfSimulations>
<uniformTimeCourse id="auto_ten_seconds" initialTime="0" outputStartTime="0" outputEndTime="10" numberOfSteps="1000">
<uniformTimeCourse id="auto_ten_seconds" initialTime="0" outputStartTime="0" outputEndTime="3000" numberOfSteps="10000">
<algorithm name="ODE solver" kisaoID="KISAO:0000694"/>
</uniformTimeCourse>
</listOfSimulations>
Expand Down Expand Up @@ -414,7 +414,14 @@
<dataSet id="autogen_task1_reaction_0000004" label="reaction_0000004" dataReference="auto_dg_for_task1_reaction_0000004"/>
</listOfDataSets>
</report>
<plot2D id="autogen_plot_for_task1" name="Auto-generated plot for task1, including all species.">
<plot2D id="autogen_plot_for_task1" name="Just V.">
<xAxis name="Time" type="linear"/>
<yAxis name="Species" type="linear"/>
<listOfCurves>
<curve id="autogen_curve_task1_V" name="V" logX="false" xDataReference="auto_time_for_task1" logY="false" yDataReference="auto_dg_for_task1_V"/>
</listOfCurves>
</plot2D>
<plot2D id="autogen_plot_for_task2" name="Just c.">
<xAxis name="Time" type="linear"/>
<yAxis name="Species" type="linear"/>
<listOfCurves>
Expand Down

0 comments on commit 826f4c2

Please sign in to comment.