Add validation tests

OpenSourceBrain · Nov 27, 2024 · 54595e9 · 54595e9
1 parent 2ce3254
commit 54595e9
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Showing 3 changed files with 18 additions and 1 deletion.
diff --git a/.github/workflows/omv-ci.yml b/.github/workflows/omv-ci.yml
@@ -17,7 +17,7 @@ jobs:
       fail-fast: false
       matrix:
         python-version: [ 3.7, 3.9 ]
-        engine: [ jNeuroML_validate, jNeuroML_NEURON, jNeuroML_EDEN ]
+        engine: [ jNeuroML_validate, jNeuroML_NEURON, jNeuroML_EDEN, pyNeuroML_validate_sbml ]
 
     steps:
     - uses: actions/checkout@v4

diff --git a/SBML/.test.validate.sbml.omt b/SBML/.test.validate.sbml.omt
@@ -0,0 +1,5 @@
+# Script for running automated tests on OSB using github actions, see https://github.com/OpenSourceBrain/osb-model-validation 
+
+# This test will validate the SBML files in the current directory using: pynml -validate-sbml *.xml
+target: "*.xml"
+engine: pyNeuroML_validate_sbml
diff --git a/SBML/validateAll.sh b/SBML/validateAll.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+set -ex
+
+### A script to validate SBML & SED-ML files using pyNeuroML
+
+pynml -validate-sbml *.xml
+
+echo "All XML files are valid SBML"
+
+pynml -validate-sedml *.sedml
+
+echo "All SED-ML files are valid"