Manual Jekyll sync #14
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| name: Manual Jekyll sync | |
| on: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: false # to allow multiple runs to queue up rather than clobber | |
| jobs: | |
| sync-site-repo-added-modified: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| path: wikipathways-database | |
| submodules: true | |
| fetch-depth: 0 | |
| ref: main | |
| - name: Checkout jekyll repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: wikipathways/wikipathways.github.io | |
| path: wikipathways.github.io | |
| submodules: true | |
| fetch-depth: 0 | |
| ref: main | |
| ssh-key: ${{ secrets.ACTIONS_DEPLOY_KEY }} | |
| - name: Set up ssh-agent | |
| uses: webfactory/[email protected] | |
| with: | |
| ssh-private-key: ${{ secrets.ACTIONS_DEPLOY_KEY }} ## for push into wp.gh.io repo | |
| - name: Commit report | |
| run: | | |
| git config --global user.name 'GitHub Action' | |
| git config --global user.email '[email protected]' | |
| for f in wikipathways-database/pathways/*/*.gpml; do | |
| wpid="$(basename ""$f"" | sed 's/.gpml//')" | |
| cp wikipathways-database/pathways/"$wpid"/"$wpid".md wikipathways.github.io/_pathways/ | |
| cp wikipathways-database/pathways/"$wpid"/"$wpid"-bibliography.tsv wikipathways.github.io/_data/ | |
| cp wikipathways-database/pathways/"$wpid"/"$wpid"-datanodes.tsv wikipathways.github.io/_data/ | |
| mkdir -p wikipathways.github.io/assets/img/"$wpid" | |
| cp wikipathways-database/pathways/"$wpid"/"$wpid"-thumb.png wikipathways.github.io/assets/img/"$wpid"/ || true | |
| done | |
| cd wikipathways.github.io | |
| git add . | |
| if git diff --exit-code --staged > /dev/null; then | |
| echo "No changes" | |
| else | |
| git commit -m 'Update tsv and md files' | |
| git pull --rebase | |
| git push | |
| fi |