In order to use this repository you're going to need to install g++11 and gcc11. The way you do this on mac is first by installing homebrew. The way to do that is https://brew.sh:
arch -x86_64 /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
Once you've followed those instructions, then do this:
arch -x86_64 brew install gcc@11
Then give the new c compilers a test:
/usr/local/Cellar/gcc/11.3.0/gcc11 --version
/usr/local/Cellar/gcc/11.3.0/g++11 --version
If those run correctly, try the makefile in this repository.
Repository for the SCAT code from Wasser et al
If you download this code, please take a moment to "star" the repo (click star). This will let me know that someone is interested in using the code, which will allow me to prioritize development. If no-one stars it I'll assume no-one finds it useful :).
Major revisions were released July 29, 2021.
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C++ software by M Stephens. Current maintenance by Mary Kuhner ([email protected]).
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Current version is version 3.0.2 (SCAT3)
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C++ code is in src/
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Revised manual is docs/manual.pdf; a list of changes is in this document.
##Compile
cd src/
make
##Run on example data
cd src/
./SCAT3 ../docs/test.genotype.txt ../docs/test.location.txt . 2