ivar to development version

viromelab · Jan 25, 2023 · afdb261 · afdb261
1 parent 585135e
commit afdb261
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/input_data/index.txt b/input_data/index.txt
@@ -1 +1 @@
-#place your input fastq files in this folder in gzip format
+#place your input fastq files in this folder in gzip format [symlinks can be used, for example: ls ../../*.fastq.gz | xargs ln -s -t . ]
diff --git a/src/TRACES_install.sh b/src/TRACES_install.sh
@@ -60,7 +60,7 @@ if [[ "$INSTALL_PIPELINE" -eq "1" ]];
   conda install -c bioconda art --yes
   conda install -c bioconda blast --yes
   conda install -c bioconda mummer4 --yes
-  conda install -c bioconda ivar --yes
+#  conda install -c bioconda ivar --yes
   #
   Program_installed "trimmomatic";
   Program_installed "cryfa";
@@ -83,7 +83,7 @@ if [[ "$INSTALL_PIPELINE" -eq "1" ]];
   Program_installed "art_illumina";
   Program_installed "blastn";
   Program_installed "dnadiff";
-  Program_installed "ivar";
+#  Program_installed "ivar";
   fi
 #
 # ==============================================================================
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		#place your input fastq files in this folder in gzip format
		#place your input fastq files in this folder in gzip format [symlinks can be used, for example: ls ../../*.fastq.gz \| xargs ln -s -t . ]