Create devcontainer.json

[niemasd]

With this devcontainer file, VS Code (and GitHub Codespaces) will be able to create the development environment automatically.

[niemasd]

@stevenweaver This one has now been ported to Oracle Linux and has been tested. I'm able to successfully compile and run HIV-TRACE from the Docker environment via python3 setup.py develop.

Note that this Dockerfile has the tn93 patch regarding OpenMP compatibility. I've documented it in the Dockerfile, and we should delete it once the tn93 code is patched

[stevenweaver]

@niemasd -- Is it OK to remove the sed commands now?

[niemasd]

I hadn't heard back re: this question yet:

veg/tn93#34 (comment)

So I'll go ahead and assume option 2 (using the GCC version update you suggested). So I'll do the following:

1. Update the tn93 Dockerfile to use the updated GCC version fix you found and create a new PR
2. Update the other repos' Dockerfiles to incorporate this fix as well

• I'll comment on those repos' PRs to let you know when I've tested them and confirmed that the Dockerfile works successfully

[stevenweaver]

Thanks Niema, I missed that question.

[niemasd]

No worries 😄

[niemasd]

@stevenweaver This PR is ready as of the following commit:

https://github.com/niemasd/hivtrace/commit/a12422f4601f91fd5ba19c13c1fb8e7ffe8a1823

The above commit fixes the Dockerfile such that the tn93 compilation fix for the CMake GCC-10 issue we discussed is incorporated.