First Github release candidate.

README.md

@@ -1,13 +1,39 @@
 # alignment.js
-Javascript alignment viewer.
 
+A suite of reusable [React](http://reactjs.org/) components for creating a variety of visualizations involving [multiple sequence alignments](https://en.wikipedia.org/wiki/Multiple_sequence_alignment). [View the live demo here](http://alignment.hyphy.org/).
+
+`alignment.js` can be used to create standard MSA viewers, utilizing functional programming to permit custom behavior such as highlighting individual sites:
+
+![alt text](images/standard.png)
+
+as well as scaffold viewers for next-generation sequencing data where a reference sequence stays fixed to the top:
+
+![alt text](images/scaffold.gif)
+
+and joint phylogeny/alignment viewers using packages like [phylotree.js](https://github.com/veg/phylotree.js):
+
+![alt text](images/phyalign.png)
+
+## Installation
+
+`alignment.js` is [available on NPM](https://www.npmjs.com/package/alignment.js) and can thus be installed with `npm`
+
+```
+npm install alignment.js
+```
+
+or `yarn`
+
+```
+yarn add alignment.js
+```
 
 ## Development
 
 Install a local copy:
 
 ```
-git clone https://github.com/stephenshank/alignment.js
+git clone https://github.com/veg/alignment.js
 cd alignment.js
 yarn
 ```

package.json

@@ -1,6 +1,6 @@
 {
   "name": "alignment.js",
-  "version": "1.0.8",
+  "version": "1.0.9",
   "main": "lib/alignment.js",
   "license": "MIT",
   "dependencies": {

src/scaffold_viewer.js

@@ -90,7 +90,6 @@ class ScaffoldViewer extends Component {
       },
       reference_sequence_data = this.sequence_data.slice(0,1),
       remaining_sequence_data = this.sequence_data.slice(1);
-    debugger;
     return (<div
       style={container_style}
       id='alignmentjs-main-div'