fix mysql dependency (#250) #53

	name: Build and Deploy
	on:
	push:
	branches:
	- master
	- docs # backdoor branch to update docs

	jobs:
	build-and-deploy:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout 🛎️
	uses: actions/checkout@v3

	- name: Install & Build 📜
	run: \|
	# for spinx autosummary feature, we need to install genomepy

	# setup mambaforge
	wget -q -O Mambaforge.sh "https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(uname)-$(uname -m).sh"
	bash Mambaforge.sh -b -p "${HOME}/conda" > /dev/null
	source "${HOME}/conda/etc/profile.d/conda.sh"
	source "${HOME}/conda/etc/profile.d/mamba.sh"
	mamba activate

	# create a yaml with only docs requirements
	n="$(( $(grep -n '# Plugins' environment.yml \| cut -d ':' -f1) - 1 ))"
	head environment.yml -n $n > requirements.yaml

	n="$(( $(wc -l docs/requirements.yaml \| cut -d ' ' -f1) - $(grep -n 'dependencies:' environment.yml \| cut -d ':' -f1) + 1 ))"
	tail docs/requirements.yaml -n $n >> requirements.yaml

	# install requirements
	mamba env create --name genomepy --file requirements.yaml

	# install genomepy
	mamba activate genomepy
	pip install . --no-deps --ignore-installed

	# build docs
	sphinx-build docs build
	touch build/.nojekyll

	- name: Deploy 🚀
	uses: JamesIves/github-pages-deploy-action@v4
	with:
	branch: gh-pages # The branch the action should deploy to.
	folder: build # The folder the action should deploy.
	clean: true

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