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Debug all tests#90

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DrShushen merged 13 commits intovanderschaarlab:mainvanderschaarlab/autoprognosis:mainfrom siqizhu-uk:debug_testsiqizhu-uk/autoprognosis:debug_testCopy head branch name to clipboardDec 2, 2024

+25-21

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Commits on Oct 17, 2024

• add optional param

  siqizhu-uk

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Commits on Oct 31, 2024

• shap explainer return for clssification

  siqizhu-uk

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Commits on Dec 2, 2024

• Run pre-commit

  DrShushen

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  1ad7858

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• Update .append to pd.concat for pandas 1 and 2 compatibility

  DrShushen

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• Make effect_size a parameter in CohortExplainerPlugin

  DrShushen

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• Update to pd.concat() in CohortExplainerPlugin _confidence* methods

  DrShushen

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• Set lower effect_size in test_cohort_explainer.py::test_predict_classifier

  DrShushen

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• Update actions/setup-python@v1->v5

  DrShushen

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• Remove brew unlink libomp line from GitHub workflows (mac)

  DrShushen

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• Remove PR triggers for test_R workflow

  DrShushen

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• Add a score difference tolerance in test_surv_search to make the test more stable

  DrShushen

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• Update pandas requirements to allow pandas 2

  DrShushen

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  0898634

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• Update setup.cfg to force shap>=0.45.0

  siqizhu-uk

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