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"cell_type": "markdown",
"metadata": {},
"source": [
"## Convert the CSV data to NetCDF\n\n"
"## Convert the Skytem csv data to NetCDF\n\n"
]
},
{
Expand All @@ -58,7 +58,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"1 - Raw Data - \nImport raw AEM data from CSV-format.\nDefine input data file and associated metadata file\n\n"
"1 - Raw Data -\nImport raw AEM data from CSV-format.\nDefine input data file and associated metadata file\n\n"
]
},
{
Expand All @@ -76,7 +76,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"2 - Processed Data - \nImport processed AEM data from CSV-format.\nDefine input data file and associated metadata file\n\n"
"2 - Processed Data -\nImport processed AEM data from CSV-format.\nDefine input data file and associated metadata file\n\n"
]
},
{
Expand All @@ -94,7 +94,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"3 - Inverted Models - \nImport inverted AEM models from CSV-format.\nDefine input data file and associated metadata file\n\n"
"3 - Inverted Models -\nImport inverted AEM models from CSV-format.\nDefine input data file and associated metadata file\n\n"
]
},
{
Expand All @@ -112,7 +112,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"4 - Bedrock Picks - \nImport AEM-based estimated of depth to bedrock from CSV-format.\nDefine input data file and associated metadata file\n\n"
"4 - Bedrock Picks -\nImport AEM-based estimated of depth to bedrock from CSV-format.\nDefine input data file and associated metadata file\n\n"
]
},
{
Expand All @@ -130,7 +130,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"5 - Derivative Maps - \nImport interpolated bedrock and magnetic maps from TIF-format.\nDefine input metadata file (which contains the TIF filenames linked to variable names)\n\n"
"5 - Derivative Maps -\nImport interpolated bedrock and magnetic maps from TIF-format.\nDefine input metadata file (which contains the TIF filenames linked to variable names)\n\n"
]
},
{
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},
"outputs": [],
"source": [
"d_out = join(data_path, 'model//WISkyTEM.nc')\nsurvey.write_netcdf(d_out)\n\n# print a summary of the survey contents\nsurvey.contents()"
"d_out = join(data_path, 'model//WISkyTEM.nc')\nsurvey.write_netcdf(d_out)\n\n# print a summary of the survey contents\nprint(survey.contents)"
]
},
{
Expand All @@ -177,7 +177,7 @@
},
"outputs": [],
"source": [
"new_survey = Survey().read_netcdf(d_out)"
"new_survey = Survey().read_netcdf(d_out)\n\nprint(new_survey.spatial_ref.attrs)\n\nprint(new_survey.tabular[0]['LM_gate_times'])\nprint(new_survey.tabular[0]['LM_gate_times'].values[0])"
]
},
{
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"cell_type": "markdown",
"metadata": {},
"source": [
"\n# ASEG to NetCDF \n\nThis example demonstrates the workflow for creating a GS file from the `ASEG <https://www.aseg.org.au/sites/default/files/pdf/ASEG-GDF2-REV4.pdf>`_ file format, as well as how to add multiple associated datasets to the Survey (e.g., Tabular and Raster groups). Specifically, this AEM survey contains the following datasets:\n\n1. Raw AEM data, from the Tempest system\n2. Inverted resistivity models\n3. An interpolated map of total magnetic intensity \n\nDataset Reference:\nMinsley, B.J., James, S.R., Bedrosian, P.A., Pace, M.D., Hoogenboom, B.E., and Burton, B.L., 2021, Airborne electromagnetic, magnetic, and radiometric survey of the Mississippi Alluvial Plain, November 2019 - March 2020: U.S. Geological Survey data release, https://doi.org/10.5066/P9E44CTQ.\n"
"\n# ASEG to NetCDF\n\nThis example demonstrates the workflow for creating a GS file from the `ASEG <https://www.aseg.org.au/sites/default/files/pdf/ASEG-GDF2-REV4.pdf>`_ file format, as well as how to add multiple associated datasets to the Survey (e.g., Tabular and Raster groups). Specifically, this AEM survey contains the following datasets:\n\n1. Raw AEM data, from the Tempest system\n2. Inverted resistivity models\n3. An interpolated map of total magnetic intensity\n\nDataset Reference:\nMinsley, B.J., James, S.R., Bedrosian, P.A., Pace, M.D., Hoogenboom, B.E., and Burton, B.L., 2021, Airborne electromagnetic, magnetic, and radiometric survey of the Mississippi Alluvial Plain, November 2019 - March 2020: U.S. Geological Survey data release, https://doi.org/10.5066/P9E44CTQ.\n"
]
},
{
Expand Down Expand Up @@ -58,7 +58,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"1. Raw Data - \nImport raw AEM data from ASEG-format.\nDefine input data file and associated metadata file\n\n"
"1. Raw Data -\nImport raw AEM data from ASEG-format.\nDefine input data file and associated metadata file\n\n"
]
},
{
Expand All @@ -76,7 +76,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"2. Inverted Models - \nImport inverted AEM models from ASEG-format.\nDefine input data file and associated metadata file\n\n"
"2. Inverted Models -\nImport inverted AEM models from ASEG-format.\nDefine input data file and associated metadata file\n\n"
]
},
{
Expand All @@ -94,7 +94,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"3. Magnetic Intensity Map - \nImport the magnetic data from TIF-format.\nDefine input metadata file (which contains the TIF filenames linked with desired variable names)\n\n"
"3. Magnetic Intensity Map -\nImport the magnetic data from TIF-format.\nDefine input metadata file (which contains the TIF filenames linked with desired variable names)\n\n"
]
},
{
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},
"outputs": [],
"source": [
"# Make a scatter plot of a specific tabular variable, using GSPy's plotter \nplt.figure()\nnew_survey.tabular[0].gs_tabular.scatter('Tx_Height', cmap='jet')\nplt.show()\n\n# Make a 2-D map plot of a specific raster variable, using Xarrays's plotter \nplt.figure()\nnew_survey.raster['magnetic_tmi'].plot(vmin=-1000, vmax=1000, cmap='jet')\nplt.show()"
"# Make a scatter plot of a specific tabular variable, using GSPy's plotter\nplt.figure()\nnew_survey.tabular[0].gs_tabular.scatter('Tx_Height', cmap='jet')\n\n# Make a 2-D map plot of a specific raster variable, using Xarrays's plotter\nplt.figure()\nnew_survey.raster['magnetic_tmi'].plot(vmin=-1000, vmax=1000, cmap='jet')\nplt.show()"
]
}
],
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Expand Up @@ -33,7 +33,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"## Convert the CSV data to NetCDF\n\n"
"## Convert the resolve csv data to NetCDF\n\n"
]
},
{
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},
"outputs": [],
"source": [
"# Make a scatter plot of a specific data variable, using GSPy's plotter \nplt.figure()\nnew_survey.tabular[0].gs_tabular.scatter('DTM', vmin=30, vmax=50)\nplt.show()\n\n# Make a scatter plot of a specific model variable, using GSPy's plotter \nplt.figure()\nnew_survey.tabular[1].gs_tabular.scatter('DOI_STANDARD')\nplt.show()\n\n# Check the model dataset\nprint(new_survey.tabular[1])"
"# Make a scatter plot of a specific data variable, using GSPy's plotter\nplt.figure()\nnew_survey.tabular[0].gs_tabular.scatter('DTM', vmin=30, vmax=50)\n\n# Make a scatter plot of a specific model variable, using GSPy's plotter\nplt.figure()\nnew_survey.tabular[1].gs_tabular.scatter('DOI_STANDARD')\nplt.show()\n\n# Check the model dataset\nprint(new_survey.tabular[1])"
]
}
],
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from gspy import Survey

#%%
# Convert the CSV data to NetCDF
# ++++++++++++++++++++++++++++++
# Convert the resolve csv data to NetCDF
# ++++++++++++++++++++++++++++++++++++++

#%%
# Initialize the Survey
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#%%
# Plotting

# Make a scatter plot of a specific data variable, using GSPy's plotter
# Make a scatter plot of a specific data variable, using GSPy's plotter
plt.figure()
new_survey.tabular[0].gs_tabular.scatter('DTM', vmin=30, vmax=50)
plt.show()

# Make a scatter plot of a specific model variable, using GSPy's plotter
# Make a scatter plot of a specific model variable, using GSPy's plotter
plt.figure()
new_survey.tabular[1].gs_tabular.scatter('DOI_STANDARD')
plt.show()
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Expand Up @@ -22,8 +22,8 @@
from gspy import Survey

#%%
# Convert the CSV data to NetCDF
# ++++++++++++++++++++++++++++++++++++++
# Convert the Skytem csv data to NetCDF
# +++++++++++++++++++++++++++++++++++++

#%%
# Initialize the Survey
Expand All @@ -38,7 +38,7 @@
survey = Survey(metadata)

#%%
# 1 - Raw Data -
# 1 - Raw Data -
# Import raw AEM data from CSV-format.
# Define input data file and associated metadata file
d_data1 = join(data_path, 'data//WI_SkyTEM_2021_ContractorData.csv')
Expand All @@ -48,7 +48,7 @@
survey.add_tabular(type='csv', data_filename=d_data1, metadata_file=d_supp1)

#%%
# 2 - Processed Data -
# 2 - Processed Data -
# Import processed AEM data from CSV-format.
# Define input data file and associated metadata file
d_data2 = join(data_path, 'data//WI_SkyTEM_2021_ProcessedData.csv')
Expand All @@ -58,7 +58,7 @@
survey.add_tabular(type='csv', data_filename=d_data2, metadata_file=d_supp2)

#%%
# 3 - Inverted Models -
# 3 - Inverted Models -
# Import inverted AEM models from CSV-format.
# Define input data file and associated metadata file
m_data3 = join(data_path, 'model//WI_SkyTEM_2021_InvertedModels.csv')
Expand All @@ -68,7 +68,7 @@
survey.add_tabular(type='csv', data_filename=m_data3, metadata_file=m_supp3)

#%%
# 4 - Bedrock Picks -
# 4 - Bedrock Picks -
# Import AEM-based estimated of depth to bedrock from CSV-format.
# Define input data file and associated metadata file
d_data4 = join(data_path, 'data//topDolomite_Blocky_LidarDEM.csv')
Expand All @@ -78,7 +78,7 @@
survey.add_tabular(type='csv', data_filename=d_data4, metadata_file=d_supp4)

#%%
# 5 - Derivative Maps -
# 5 - Derivative Maps -
# Import interpolated bedrock and magnetic maps from TIF-format.
# Define input metadata file (which contains the TIF filenames linked to variable names)
m_supp5 = join(data_path, 'data//WI_SkyTEM_mag_bedrock_grids_md.json')
Expand All @@ -92,12 +92,17 @@
survey.write_netcdf(d_out)

# print a summary of the survey contents
survey.contents()
print(survey.contents)

#%%
# Reading back in
new_survey = Survey().read_netcdf(d_out)

print(new_survey.spatial_ref.attrs)

print(new_survey.tabular[0]['LM_gate_times'])
print(new_survey.tabular[0]['LM_gate_times'].values[0])

#%%
# Plotting

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@@ -1,12 +1,12 @@
"""
ASEG to NetCDF
ASEG to NetCDF
--------------
This example demonstrates the workflow for creating a GS file from the `ASEG <https://www.aseg.org.au/sites/default/files/pdf/ASEG-GDF2-REV4.pdf>`_ file format, as well as how to add multiple associated datasets to the Survey (e.g., Tabular and Raster groups). Specifically, this AEM survey contains the following datasets:
1. Raw AEM data, from the Tempest system
2. Inverted resistivity models
3. An interpolated map of total magnetic intensity
3. An interpolated map of total magnetic intensity
Dataset Reference:
Minsley, B.J., James, S.R., Bedrosian, P.A., Pace, M.D., Hoogenboom, B.E., and Burton, B.L., 2021, Airborne electromagnetic, magnetic, and radiometric survey of the Mississippi Alluvial Plain, November 2019 - March 2020: U.S. Geological Survey data release, https://doi.org/10.5066/P9E44CTQ.
Expand Down Expand Up @@ -35,7 +35,7 @@
survey = Survey(metadata)

#%%
# 1. Raw Data -
# 1. Raw Data -
# Import raw AEM data from ASEG-format.
# Define input data file and associated metadata file
d_data = join(data_path, 'data//Tempest.dat')
Expand All @@ -45,7 +45,7 @@
survey.add_tabular(type='aseg', data_filename=d_data, metadata_file=d_supp)

#%%
# 2. Inverted Models -
# 2. Inverted Models -
# Import inverted AEM models from ASEG-format.
# Define input data file and associated metadata file
m_data = join(data_path, 'model//Tempest_model.dat')
Expand All @@ -55,7 +55,7 @@
survey.add_tabular(type='aseg', data_filename=m_data, metadata_file=m_supp)

#%%
# 3. Magnetic Intensity Map -
# 3. Magnetic Intensity Map -
# Import the magnetic data from TIF-format.
# Define input metadata file (which contains the TIF filenames linked with desired variable names)
r_supp = join(data_path, 'data//Tempest_raster_md.json')
Expand All @@ -77,12 +77,11 @@
# %%
# Plotting

# Make a scatter plot of a specific tabular variable, using GSPy's plotter
# Make a scatter plot of a specific tabular variable, using GSPy's plotter
plt.figure()
new_survey.tabular[0].gs_tabular.scatter('Tx_Height', cmap='jet')
plt.show()

# Make a 2-D map plot of a specific raster variable, using Xarrays's plotter
# Make a 2-D map plot of a specific raster variable, using Xarrays's plotter
plt.figure()
new_survey.raster['magnetic_tmi'].plot(vmin=-1000, vmax=1000, cmap='jet')
plt.show()
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