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Update to Marko's API #2

Merged
merged 35 commits into from
Sep 7, 2022
Merged

Update to Marko's API #2

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41cdab5
Add bed serialization
GabrielSimonetto Jul 3, 2022
17a7479
Add bed serialization test
GabrielSimonetto Jul 3, 2022
6b7c622
Add bed from_reader deserialization
GabrielSimonetto Jul 3, 2022
8500ffb
Add basic deserializer (directly from serde docs)
GabrielSimonetto Jul 6, 2022
a83fcbd
Add Deserialization for bed::Record<3>
GabrielSimonetto Jul 7, 2022
d9a5ddc
Add de tests and vec tests
GabrielSimonetto Jul 8, 2022
14960da
Fail from_reader if any record is rejected
GabrielSimonetto Jul 12, 2022
d84c9e5
Introduce test_bed_deserialization_with_whitespaces (currently fails)
GabrielSimonetto Jul 12, 2022
fb52d40
Change expect's to unwrap's
GabrielSimonetto Jul 12, 2022
2ea2769
Fix comments
GabrielSimonetto Jul 13, 2022
114abb1
Remove unwraps and map to custom error
GabrielSimonetto Jul 18, 2022
c900009
Unnest impl blocks
GabrielSimonetto Jul 18, 2022
afb9130
ERASEME: showcasing derive for Deserialize
GabrielSimonetto Jul 19, 2022
07bd3d0
Revert "ERASEME: showcasing derive for Deserialize"
GabrielSimonetto Jul 19, 2022
b5e959b
Example of bed serialization and deserialization.
mmalenic Jul 25, 2022
f5a0dbd
Update example to use noodles Record.
mmalenic Jul 25, 2022
9b465d3
Update comments
mmalenic Jul 25, 2022
e0a892e
Update comments
mmalenic Jul 25, 2022
0484112
Implement verbose ser.rs
GabrielSimonetto Aug 14, 2022
bf0ddad
Add serde_with and wrapper to use Display as serialization
GabrielSimonetto Aug 16, 2022
afcaf12
wip: architecture suggestion
GabrielSimonetto Aug 16, 2022
3877beb
Using a custom Enum to allow all bed record types on AuxiliarBedRecor…
GabrielSimonetto Aug 17, 2022
de846c3
Revert "Using a custom Enum to allow all bed record types on Auxiliar…
GabrielSimonetto Aug 18, 2022
17fe14d
wip: failed attempt to force Display for Record<N>
GabrielSimonetto Aug 18, 2022
46b4400
Revert "wip: failed attempt to force Display for Record<N>"
GabrielSimonetto Aug 18, 2022
658ebed
Generalize for Record<N> using trait stacking
GabrielSimonetto Aug 18, 2022
5afcb5f
wip: loop on deserializer test
GabrielSimonetto Aug 25, 2022
d8edca5
Change wrapper to be newtype_struct, deserializaton works
GabrielSimonetto Aug 29, 2022
eeb9f52
Adapt deserializer for sequences
GabrielSimonetto Aug 30, 2022
d3cc40b
Add test Record<4> deserialization
GabrielSimonetto Aug 30, 2022
530aec3
Cleanup
GabrielSimonetto Aug 30, 2022
80f6b38
Add all serde Record<N> tests
GabrielSimonetto Aug 30, 2022
167c8ab
Clean code:
GabrielSimonetto Sep 1, 2022
9975017
Adapt ser.rs to better showcase the inner workings of the code
GabrielSimonetto Sep 1, 2022
ce6fb3c
Apply change requests
GabrielSimonetto Sep 5, 2022
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