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SOMA is a Nextflow pipeline designed to comprehensively assess metagenomic samples sequenced using Illumina short-reads.
The pipeline has two primary approaches to analysis:
1). Read-based taxonomic classification - assign a taxonomic designation to individual sequencing reads.
2). Metagenome assembly - assemble and perform in silico typing typing of metagenome assembled genomes
Detailed guidance on the installation, usage and function of SOMA can be found in this wiki, using the navigation bar on the right.