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8 changes: 4 additions & 4 deletions Billiards.html

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1,394 changes: 696 additions & 698 deletions Cookbook.html

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18,954 changes: 9,448 additions & 9,506 deletions FLIP.html

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6,125 changes: 3,052 additions & 3,073 deletions Fluid_Simulation.html

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6 changes: 3 additions & 3 deletions Fluids_Tutorial.html

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2 changes: 2 additions & 0 deletions Geometry.md
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Expand Up @@ -51,6 +51,8 @@ Rotation: `geometry.rotate(angle)`

Union: `union(geometries)`

Intersection: `intersection(geometries)`

Geometries can be inverted using the `~` operator, i.e. the results of
`lies_inside`, `approximate_signed_distance` and `approximate_fraction_inside` return the inverse values.

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20 changes: 10 additions & 10 deletions Heightmaps.html

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20 changes: 10 additions & 10 deletions IO_with_Scenes.html

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30 changes: 15 additions & 15 deletions Math_Introduction.html

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10 changes: 5 additions & 5 deletions SDF.html

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2 changes: 1 addition & 1 deletion Unstructured.html
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Expand Up @@ -15198,7 +15198,7 @@ <h2 id="Loading-an-Unstructured-Mesh">Loading an Unstructured Mesh<a class="anch
Cell <span class="ansi-green-fg">In[3], line 1</span>
<span class="ansi-green-fg">----&gt; 1</span> mesh <span style="color: rgb(98,98,98)">=</span> <span class="ansi-yellow-bg">geom</span><span class="ansi-yellow-bg" style="color: rgb(98,98,98)">.</span><span class="ansi-yellow-bg">load_su2</span><span class="ansi-yellow-bg">(</span><span class="ansi-yellow-bg" style="color: rgb(175,0,0)">&#34;</span><span class="ansi-yellow-bg" style="color: rgb(175,0,0)">mesh_wedge_inv.su2</span><span class="ansi-yellow-bg" style="color: rgb(175,0,0)">&#34;</span><span class="ansi-yellow-bg">,</span><span class="ansi-yellow-bg"> </span><span class="ansi-yellow-bg">face_format</span><span class="ansi-yellow-bg" style="color: rgb(98,98,98)">=</span><span class="ansi-yellow-bg" style="color: rgb(175,0,0)">&#39;</span><span class="ansi-yellow-bg" style="color: rgb(175,0,0)">csc</span><span class="ansi-yellow-bg" style="color: rgb(175,0,0)">&#39;</span><span class="ansi-yellow-bg">)</span>

File <span class="ansi-green-fg">/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/site-packages/phi/geom/_mesh.py:334</span>, in <span class="ansi-cyan-fg">load_su2</span><span class="ansi-blue-fg">(file_or_mesh, cell_dim, face_format)</span>
File <span class="ansi-green-fg">/opt/hostedtoolcache/Python/3.12.5/x64/lib/python3.12/site-packages/phi/geom/_mesh.py:334</span>, in <span class="ansi-cyan-fg">load_su2</span><span class="ansi-blue-fg">(file_or_mesh, cell_dim, face_format)</span>
<span class="ansi-green-intense-fg ansi-bold"> 320</span> <span style="color: rgb(175,0,0)">&#34;&#34;&#34;</span>
<span class="ansi-green-intense-fg ansi-bold"> 321</span> <span style="color: rgb(175,0,0)">Load an unstructured mesh from a `.su2` file.</span>
<span class="ansi-green-intense-fg ansi-bold"> 322</span>
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8 changes: 4 additions & 4 deletions data/sim_000000/description.json
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null
],
"data": [
0.93009352684021,
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0.9237312078475952,
0.8798200488090515
]
},
"__tensors__": [
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{
"smoothness": 0.93009352684021
"smoothness": 0.1081659197807312
}
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{
"smoothness": 0.9294790029525757
"smoothness": 0.7234576344490051
}
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{
"smoothness": 0.5986611843109131
"smoothness": 0.9237312078475952
}
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{
"smoothness": 0.4412170648574829
"smoothness": 0.8798200488090515
}
12 changes: 6 additions & 6 deletions phi/field/index.html
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<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, minimum-scale=1">
<meta name="generator" content="pdoc3 0.11.0">
<meta name="generator" content="pdoc3 0.11.1">
<title>phi.field API documentation</title>
<meta name="description" content="The fields module provides a number of data structures and functions to represent continuous, spatially varying data …">
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Expand Down Expand Up @@ -188,7 +188,7 @@ <h2 id="returns">Returns</h2>
<p>Absolute value of <code>x</code> of same type as <code>x</code>.</p></div>
</dd>
<dt id="phi.field.as_boundary"><code class="name flex">
<span>def <span class="ident">as_boundary</span></span>(<span>obj: Union[phiml.math.extrapolation.Extrapolation, phiml.math._tensors.Tensor, float, phi.field._field.Field, None]) ‑> phiml.math.extrapolation.Extrapolation</span>
<span>def <span class="ident">as_boundary</span></span>(<span>obj: Union[phiml.math.extrapolation.Extrapolation, phiml.math._tensors.Tensor, float, phi.field._field.Field, ForwardRef(None)]) ‑> phiml.math.extrapolation.Extrapolation</span>
</code></dt>
<dd>
<div class="desc"><p>Returns an <code>Extrapolation</code> representing <code>obj</code>.</p>
Expand Down Expand Up @@ -325,7 +325,7 @@ <h2 id="args">Args</h2>
</dl></div>
</dd>
<dt id="phi.field.divergence"><code class="name flex">
<span>def <span class="ident">divergence</span></span>(<span>field: phi.field._field.Field, order=2, implicit: phiml.math._optimize.Solve = None, upwind: phi.field._field.Field = None, implicitness: int = None) ‑> <function <a title="phi.field.CenteredGrid" href="#phi.field.CenteredGrid">CenteredGrid()</a> at 0x7f4413764c10></span>
<span>def <span class="ident">divergence</span></span>(<span>field: phi.field._field.Field, order=2, implicit: phiml.math._optimize.Solve = None, upwind: phi.field._field.Field = None, implicitness: int = None) ‑> <function <a title="phi.field.CenteredGrid" href="#phi.field.CenteredGrid">CenteredGrid()</a> at 0x7fdd81475da0></span>
</code></dt>
<dd>
<div class="desc"><p>Computes the divergence of a grid using finite differences.</p>
Expand Down Expand Up @@ -650,7 +650,7 @@ <h2 id="returns">Returns</h2>
<p>Function with similar signature and return values as <code>f</code>.</p></div>
</dd>
<dt id="phi.field.jit_compile_linear"><code class="name flex">
<span>def <span class="ident">jit_compile_linear</span></span>(<span>f: Callable[[~X], ~Y] = None, auxiliary_args: str = None, forget_traces: bool = None)> phiml.math._functional.LinearFunction[~X, ~Y]</span>
<span>def <span class="ident">jit_compile_linear</span></span>(<span>f: Callable[[~X], ~Y] = None, auxiliary_args: str = None, forget_traces: bool = None)</span>
</code></dt>
<dd>
<div class="desc"><p>Compile an optimized representation of the linear function <code>f</code>.
Expand Down Expand Up @@ -6819,7 +6819,7 @@ <h3>Methods</h3>
<h3>Static methods</h3>
<dl>
<dt id="phi.field.Scene.at"><code class="name flex">
<span>def <span class="ident">at</span></span>(<span>directory: Union[str, tuple, list, phiml.math._tensors.Tensor, ForwardRef('<a title="phi.field.Scene" href="#phi.field.Scene">Scene</a>')], id: Union[int, phiml.math._tensors.Tensor, None] = None) ‑> phi.field._scene.Scene</span>
<span>def <span class="ident">at</span></span>(<span>directory: Union[str, tuple, list, phiml.math._tensors.Tensor, ForwardRef('<a title="phi.field.Scene" href="#phi.field.Scene">Scene</a>')], id: Union[int, phiml.math._tensors.Tensor, ForwardRef(None)] = None) ‑> phi.field._scene.Scene</span>
</code></dt>
<dd>
<div class="desc"><p>Creates a <code><a title="phi.field.Scene" href="#phi.field.Scene">Scene</a></code> for an existing directory.</p>
Expand Down Expand Up @@ -7603,7 +7603,7 @@ <h4><code><a title="phi.field.SoftGeometryMask" href="#phi.field.SoftGeometryMas
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4 changes: 2 additions & 2 deletions phi/flow.html
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<head>
<meta charset="utf-8">
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<title>phi.flow API documentation</title>
<meta name="description" content="*Main PhiFlow import:* `from phi.flow import *` …">
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Expand Down Expand Up @@ -54,7 +54,7 @@ <h1 class="title">Module <code>phi.flow</code></h1>
</nav>
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50 changes: 41 additions & 9 deletions phi/geom/index.html
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<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, minimum-scale=1">
<meta name="generator" content="pdoc3 0.11.0">
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<title>phi.geom API documentation</title>
<meta name="description" content="Differentiable geometry package …">
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Expand Down Expand Up @@ -110,7 +110,7 @@ <h2 id="examples">Examples</h2>
</code></pre></div>
</dd>
<dt id="phi.geom.embed"><code class="name flex">
<span>def <span class="ident">embed</span></span>(<span>geometry: phi.geom._geom.Geometry, projected_dims: Union[phiml.math._shape.Shape, str, tuple, list, None]) ‑> phi.geom._geom.Geometry</span>
<span>def <span class="ident">embed</span></span>(<span>geometry: phi.geom._geom.Geometry, projected_dims: Union[phiml.math._shape.Shape, str, tuple, list, ForwardRef(None)]) ‑> phi.geom._geom.Geometry</span>
</code></dt>
<dd>
<div class="desc"><p>Adds fake spatial dimensions to a geometry.
Expand Down Expand Up @@ -149,6 +149,22 @@ <h2 id="args">Args</h2>
<h2 id="returns">Returns</h2>
<p><code><a title="phi.geom.Geometry" href="#phi.geom.Geometry">Geometry</a></code></p></div>
</dd>
<dt id="phi.geom.intersection"><code class="name flex">
<span>def <span class="ident">intersection</span></span>(<span>*geometries, dim=(intersectionⁱ=None)) ‑> phi.geom._geom.Geometry</span>
</code></dt>
<dd>
<div class="desc"><p>Intersection of the given geometries.
A point lies inside the union if it lies within all of the geometries.</p>
<h2 id="args">Args</h2>
<dl>
<dt><strong><code>*geometries</code></strong></dt>
<dd>arbitrary geometries with same spatial dims. Arbitrary batch dims are allowed.</dd>
<dt><strong><code>dim</code></strong></dt>
<dd>Intersection dimension. This must be an instance dimension.</dd>
</dl>
<h2 id="returns">Returns</h2>
<p>intersection <code><a title="phi.geom.Geometry" href="#phi.geom.Geometry">Geometry</a></code></p></div>
</dd>
<dt id="phi.geom.invert"><code class="name flex">
<span>def <span class="ident">invert</span></span>(<span>geometry: phi.geom._geom.Geometry)</span>
</code></dt>
Expand Down Expand Up @@ -201,7 +217,7 @@ <h2 id="returns">Returns</h2>
<p><code><a title="phi.geom.Mesh" href="#phi.geom.Mesh">Mesh</a></code></p></div>
</dd>
<dt id="phi.geom.mesh"><code class="name flex">
<span>def <span class="ident">mesh</span></span>(<span>vertices: phiml.math._tensors.Tensor, polygons: phiml.math._tensors.Tensor, boundaries: Union[str, Dict[str, List[Sequence[+T_co]]]], face_format: str = 'csc')</span>
<span>def <span class="ident">mesh</span></span>(<span>vertices: phiml.math._tensors.Tensor, polygons: phiml.math._tensors.Tensor, boundaries: Union[str, Dict[str, List[Sequence]]], face_format: str = 'csc')</span>
</code></dt>
<dd>
<div class="desc"><p>Create a mesh from vertex positions and vertex lists.</p>
Expand All @@ -224,7 +240,7 @@ <h2 id="returns">Returns</h2>
<p><code><a title="phi.geom.Mesh" href="#phi.geom.Mesh">Mesh</a></code></p></div>
</dd>
<dt id="phi.geom.mesh_from_numpy"><code class="name flex">
<span>def <span class="ident">mesh_from_numpy</span></span>(<span>points: Union[list, numpy.ndarray], polygons: list, boundaries: Dict[str, List[Sequence[+T_co]]], cell_dim: phiml.math._shape.Shape = (cellsⁱ=None), face_format: str = 'csc') ‑> phi.geom._mesh.Mesh</span>
<span>def <span class="ident">mesh_from_numpy</span></span>(<span>points: Union[list, numpy.ndarray], polygons: list, boundaries: Dict[str, List[Sequence]], cell_dim: phiml.math._shape.Shape = (cellsⁱ=None), face_format: str = 'csc') ‑> phi.geom._mesh.Mesh</span>
</code></dt>
<dd>
<div class="desc"><p>Construct an unstructured mesh from vertices.</p>
Expand Down Expand Up @@ -1026,7 +1042,7 @@ <h2 id="args">Args</h2>
</dd>
<dt id="phi.geom.Box"><code class="flex name class">
<span>class <span class="ident">Box</span></span>
<span>(</span><span>lower: phiml.math._tensors.Tensor = None, upper: phiml.math._tensors.Tensor = None, **size: Union[float, phiml.math._tensors.Tensor, tuple, list, None])</span>
<span>(</span><span>lower: phiml.math._tensors.Tensor = None, upper: phiml.math._tensors.Tensor = None, **size: Union[float, phiml.math._tensors.Tensor, tuple, list, ForwardRef(None)])</span>
</code></dt>
<dd>
<div class="desc"><p>Simple cuboid defined by location of lower and upper corner in physical space.</p>
Expand Down Expand Up @@ -1135,6 +1151,12 @@ <h2 id="args">Args</h2>
return self
return Box(math.min(self._lower, dim), math.max(self._upper, dim))

def smallest(self, dim: DimFilter) -&gt; &#39;Box&#39;:
dim = self.shape.without(&#39;vector&#39;).only(dim)
if not dim:
return self
return Box(math.max(self._lower, dim), math.min(self._upper, dim))

def __variable_attrs__(self):
return &#39;_lower&#39;, &#39;_upper&#39;

Expand Down Expand Up @@ -1397,6 +1419,12 @@ <h2 id="returns">Returns</h2>
<dd>shifted geometry</dd>
</dl></div>
</dd>
<dt id="phi.geom.Box.smallest"><code class="name flex">
<span>def <span class="ident">smallest</span></span>(<span>self, dim: Union[str, tuple, list, set, ForwardRef('Shape'), Callable]) ‑> phi.geom._box.Box</span>
</code></dt>
<dd>
<div class="desc"></div>
</dd>
<dt id="phi.geom.Box.without"><code class="name flex">
<span>def <span class="ident">without</span></span>(<span>self, dims: Tuple[str, ...])</span>
</code></dt>
Expand Down Expand Up @@ -2181,7 +2209,8 @@ <h2 id="returns">Returns</h2>
return NotImplemented # let attributes be stacked
else:
from ._geom_ops import GeometryStack
return GeometryStack(math.layout(values, dim))
set_op = kwargs.get(&#39;set_op&#39;)
return GeometryStack(math.layout(values, dim), set_op)

def __flatten__(self, flat_dim: Shape, flatten_batch: bool, **kwargs) -&gt; &#39;Geometry&#39;:
dims = self.shape.without(&#39;vector&#39;)
Expand Down Expand Up @@ -2748,7 +2777,7 @@ <h3>Ancestors</h3>
</dd>
<dt id="phi.geom.Graph"><code class="flex name class">
<span>class <span class="ident">Graph</span></span>
<span>(</span><span>nodes: Union[phiml.math._tensors.Tensor, phi.geom._geom.Geometry], edges: phiml.math._tensors.Tensor, boundary: Dict[str, Dict[str, slice]], deltas=None, distances=None, bounding_distance: Union[bool, phiml.math._tensors.Tensor, float, None] = False)</span>
<span>(</span><span>nodes: Union[phiml.math._tensors.Tensor, phi.geom._geom.Geometry], edges: phiml.math._tensors.Tensor, boundary: Dict[str, Dict[str, slice]], deltas=None, distances=None, bounding_distance: Union[bool, phiml.math._tensors.Tensor, float, ForwardRef(None)] = False)</span>
</code></dt>
<dd>
<div class="desc"><p>A graph consists of multiple geometry nodes and corresponding edge information.</p>
Expand Down Expand Up @@ -6595,7 +6624,8 @@ <h2 id="args">Args</h2>
@staticmethod
def __stack__(values: tuple, dim: Shape, **kwargs) -&gt; &#39;Geometry&#39;:
from ._geom_ops import GeometryStack
return GeometryStack(math.layout(values, dim))
set_op = kwargs.get(&#39;set_op&#39;)
return GeometryStack(math.layout(values, dim), set_op)

def __replace_dims__(self, dims: Tuple[str, ...], new_dims: Shape, **kwargs) -&gt; &#39;UniformGrid&#39;:
resolution = math.rename_dims(self._resolution, dims, new_dims).spatial
Expand Down Expand Up @@ -7073,6 +7103,7 @@ <h2 id="returns">Returns</h2>
<li><code><a title="phi.geom.concat" href="#phi.geom.concat">concat</a></code></li>
<li><code><a title="phi.geom.embed" href="#phi.geom.embed">embed</a></code></li>
<li><code><a title="phi.geom.infinite_cylinder" href="#phi.geom.infinite_cylinder">infinite_cylinder</a></code></li>
<li><code><a title="phi.geom.intersection" href="#phi.geom.intersection">intersection</a></code></li>
<li><code><a title="phi.geom.invert" href="#phi.geom.invert">invert</a></code></li>
<li><code><a title="phi.geom.load_gmsh" href="#phi.geom.load_gmsh">load_gmsh</a></code></li>
<li><code><a title="phi.geom.load_su2" href="#phi.geom.load_su2">load_su2</a></code></li>
Expand Down Expand Up @@ -7139,6 +7170,7 @@ <h4><code><a title="phi.geom.Box" href="#phi.geom.Box">Box</a></code></h4>
<li><code><a title="phi.geom.Box.shape" href="#phi.geom.Box.shape">shape</a></code></li>
<li><code><a title="phi.geom.Box.shifted" href="#phi.geom.Box.shifted">shifted</a></code></li>
<li><code><a title="phi.geom.Box.size" href="#phi.geom.Box.size">size</a></code></li>
<li><code><a title="phi.geom.Box.smallest" href="#phi.geom.Box.smallest">smallest</a></code></li>
<li><code><a title="phi.geom.Box.upper" href="#phi.geom.Box.upper">upper</a></code></li>
<li><code><a title="phi.geom.Box.without" href="#phi.geom.Box.without">without</a></code></li>
</ul>
Expand Down Expand Up @@ -7431,7 +7463,7 @@ <h4><code><a title="phi.geom.UniformGrid" href="#phi.geom.UniformGrid">UniformGr
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4 changes: 2 additions & 2 deletions phi/index.html
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4 changes: 2 additions & 2 deletions phi/jax/flow.html
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