[HMAS] update version to 1.2.1

[Michal-Babins]

This PR updates the following for HMAS and closes issue #2:

• Updates HMAS version to 1.2.1
• Updates cutadapt version to 4.8
• Add biopython specification of 1.84
  These are consistent with HMAS versions found here:
  https://github.com/ncezid-biome/HMAS-QC-Pipeline2/blob/main/bin/hmas.yaml

The following outputs are changed as well, this is due to how version 1.2.1 fuses the --outdir prefix with the version and timestamp, so outputs are now collected as the following:

File hmas_report = glob("OUT_v*/*report*.csv")[0]
File hmas_multiqc_html = glob("OUT_v*/multiqc_report*.html")[0]
File hmas_mqc_yaml = glob("OUT_v*/report_mqc.yaml")[0]
Array[File] hmas_final_fasta = glob("OUT_v*/*/*.final.unique.fasta")

The changes were tested against HMAS_sample datatable and the run can be found here on terra

The version change will also have the report in a pattern as such: report_v1.2.1_$(date '+%Y%m%d_%H%M%S').csv
Example: report_v1.2.1_20241220_182041.csv

Before in v1.2.0 the report was simply report.csv,

Testing

User can repeat the test above and test with other data. I tested with the only HMAS test data I could find.