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Set-1 LUTs Updates #578

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Aug 21, 2024
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e26421a
Set-1 LUTs Updates
arunherb Jul 19, 2024
842f4fc
Added the prefix for 'plant life stages' categorical values and new m…
arunherb Jul 19, 2024
4301272
Added the LUTs concepts and its categorical missing values for the 'd…
arunherb Jul 19, 2024
3c9fcfe
Updated growth form LUTs; added new URI, skos:notation and standardiz…
arunherb Jul 23, 2024
3c52f9b
Updated the concepts and standardized the prefix for voucher specimen…
arunherb Jul 23, 2024
b68cba4
Updated the LUT concepts and notations and its definitions for 'obser…
arunherb Jul 23, 2024
bad3877
Updated the phenological stage concepts and URIs
arunherb Jul 23, 2024
9562870
Added the LUT concepts for plot points and its collection file.
arunherb Jul 23, 2024
ff36b25
Updated the observation method concepts (removed prefixes) and standa…
arunherb Jul 26, 2024
a0f5eff
Fixed definition of the this vocab (please review the CATEGORICAL COL…
arunherb Jul 31, 2024
49c6613
Removed duplicated source in 'field species name'
arunherb Jul 31, 2024
acd03b8
Updated text in the categorical collection, 'soil lithology types'
arunherb Jul 31, 2024
05c7576
Plot revisit and site revisit reason - duplicated concepts
arunherb Aug 1, 2024
aedc0f5
typo in 'vegetation mapping field ID'
arunherb Aug 1, 2024
9b53f19
Updated photo ID label, definition and source as a generic concept
arunherb Aug 1, 2024
9032d1c
stratum type - updated definition, source and altlabel making it a ge…
arunherb Aug 1, 2024
ccb210e
deleted 'site revisit reason' concept from collection URI
arunherb Aug 2, 2024
274623a
Updated typos and prefixes for voucher specimen types and also fixed …
arunherb Aug 2, 2024
5e9f72f
Added notations to LUT concepts direction codes
arunherb Aug 2, 2024
e7d2329
Standardized the 'growth stages' LUTs and updated the PrefLabel and c…
arunherb Aug 5, 2024
c7e1725
Duplicated concept LUT 'Hair/fur'
arunherb Aug 5, 2024
9940883
Removed duplicated concepts and standardized the definitions and URI …
arunherb Aug 5, 2024
8c68053
updated prefLabel and definitions based on group discussion
arunherb Aug 15, 2024
80ee383
Updated growth stage discrepancies based on group discussion
arunherb Aug 15, 2024
f911e25
fixed value types based on Monitor App
arunherb Aug 15, 2024
f669ea3
Merge branch 'main' into set-1-LUTs
junrongYu Aug 16, 2024
7fb5044
Normalized all Turtle files
junrongYu Aug 16, 2024
0c05df9
Renamed concept files for target species relevant attributes
junrongYu Aug 16, 2024
2663113
For attribute `transect alignment`, removed LUT, changed value type t…
junrongYu Aug 16, 2024
0074386
In Plot description, replaced URI of OP `growth stage` with `vegetati…
junrongYu Aug 16, 2024
d0f4d64
Normalized Turtle files
junrongYu Aug 16, 2024
319e08f
Fixed typos in file paths - LUT `growth forms`
junrongYu Aug 19, 2024
0c2457e
In LUT `life stages`, brought metadata of concept `immature Fruit` back
junrongYu Aug 19, 2024
60691b7
In LUT `observation methods tier 2`, updated definition for concept `…
junrongYu Aug 19, 2024
1583df3
In LUT `phenological stages`, removed redundant metadata for concept …
junrongYu Aug 19, 2024
b3c69c7
In LUT `vegetation age structure classes`, fixed PREFIX urnc and sour…
junrongYu Aug 19, 2024
25f4ac0
In LUT `vegetation age structure classes`, fixed typos
junrongYu Aug 19, 2024
4aeb5c0
Removed deprecated concept URI from LUT `voucher specimen sample types`
junrongYu Aug 19, 2024
1eca709
Fixed typos for LUT concepts; Added concept `immature Fruit` back
junrongYu Aug 19, 2024
c276bf1
Resolved duplicated LUT concept `cleared, non-native vegetation, buil…
junrongYu Aug 20, 2024
cd85791
Resolved duplicate LUT concept `Other shrublands`
junrongYu Aug 20, 2024
1ea170b
Resolved duplicate LUT concept `unclassified native vegetation`
junrongYu Aug 20, 2024
922a6db
Resolved duplicate LUT concept `gravel`
junrongYu Aug 20, 2024
719f1f4
Resolved duplicate LUT concept `other forests and woodlands`
junrongYu Aug 20, 2024
bd0d122
Resolved duplicate LUT concept `unknown/no data`
junrongYu Aug 20, 2024
6c293f6
Resolved duplicate LUT concept `mangroves`
junrongYu Aug 20, 2024
d7a09a7
Resolved duplicate LUT concept `unclassified forest`
junrongYu Aug 20, 2024
0d2fa64
Resolved duplicate LUT concept `pan trap`
junrongYu Aug 20, 2024
97fa52b
Resolved duplicate LUT concept `other`
junrongYu Aug 20, 2024
b832bf4
Resolved duplicate LUT concept `other open woodlands`
junrongYu Aug 20, 2024
6201955
Resolved duplicate LUT concept `hummock grassland`
junrongYu Aug 20, 2024
0e5f0fd
Resolved duplicate LUT concept `callitris forests and woodlands`
junrongYu Aug 20, 2024
c378dcd
Resolved duplicate LUT concept `heathlands`
junrongYu Aug 20, 2024
e9ab2a8
Backup observation methods tier 3 in `deprecated_vocabs`
junrongYu Aug 20, 2024
473e4f4
Removed outdated codes from LUT `observation methods - tier 3`
junrongYu Aug 20, 2024
0c03a8d
Removed new attribute `disturbance history status`
junrongYu Aug 21, 2024
24bb75a
Updated labels of LUT concepts that belong to multiple collections, t…
junrongYu Aug 21, 2024
88355c2
Updated concepts' definitions in LUT `direction codes`
junrongYu Aug 21, 2024
ba168cd
Updated concepts' definitions in `basal sweep sampling points`
junrongYu Aug 21, 2024
16abdf8
Updated concepts' definitions in `plot marker locations`
junrongYu Aug 21, 2024
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8 changes: 5 additions & 3 deletions vocab_files/attribute_concepts/bioregion.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -7,13 +7,15 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

<https://linked.data.gov.au/def/nrm/507d7e56-8e1a-4c9e-af03-5ba3b2b03374>
a skos:Concept ;
dcterms:description "The latest version-7, IBRA7, classifies Australia's landscapes into 89 large geographically distinct bioregions based on common climate, geology, landform, native vegetation and species information." ;
dcterms:description "The Interim Biogeographic Regionalisation for Australia (IBRA) is a large scale regional classification of homogenous ecosystems, and sub-regions in the Australian continent. The latest version-7, IBRA7, classifies Australia's landscapes into 89 large geographically distinct bioregions based on common climate, geology, landform, native vegetation and species information." ;
dcterms:source
"https://www.dcceew.gov.au/sites/default/files/documents/revision-ibra-development-5-1-summary-report.pdf"^^xsd:anyURI ,
"Thackway, R and Cresswell, I 1995 An Interim Biogeographic Regionalisation for Australia: a framework for setting priorities in the National Reserves System Cooperative Program Version 4, Australian Nature Conservation Agency, Canberra" ;
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:altlabel "Australia's bioregion (IBRA)" ;
skos:definition "The Interim Biogeographic Regionalisation for Australia (IBRA) is a large scale regional classification of homogenous ecosystems, and sub-regions in the Australian continent. There are more than " ;
skos:altlabel
"Australia's bioregion (IBRA)" ,
"ecoregion" ;
skos:definition "A bioregion is a geographical area, either terrestrial or aquatic or semi-aquatic, which harbours distinct ecological communities and not defined by any administrative boundaries." ;
skos:prefLabel "bioregion" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/bioregion.ttl"^^xsd:anyURI ;
tern:hasCategoricalCollection <http://linked.data.gov.au/dataset/bioregion/IBRA7> ;
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6 changes: 3 additions & 3 deletions vocab_files/attribute_concepts/photo-id.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -7,10 +7,10 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

<https://linked.data.gov.au/def/nrm/42908b95-a31c-40f3-a5e5-0b395a1962a2>
a skos:Concept ;
dcterms:source "McCallum K, Laws M, Bignall J, O’Neill S, Sparrow B. (unpublished draft) ‘Invertebrate module’ in ….. (eds) Ecological Field Monitoring Protocols Manual: Standardising environmental monitoring and data systems for improved decision making. Draft v 0.1 Report to DCCEEW. TERN, Adelaide." ;
dcterms:source "Bignall J, Laws M, McCallum K, O’Neill S, Lewis, D, Sparrow B (2023) Vegetation Mapping Module. In ‘Ecological Field Monitoring Protocols Manual using the Ecological Monitoring System Australia’. (Eds S O’Neill, K Irvine, A Tokmakoff, B Sparrow). TERN, Adelaide." ;
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:definition "The photographic identification taken during an ecological survey." ;
skos:prefLabel "photo id" ;
skos:definition "A unique identifier of the photograph/s." ;
skos:prefLabel "photo ID" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/photo-id.ttl"^^xsd:anyURI ;
tern:isAttributeOf tern:Sample ;
tern:valueType tern:Text ;
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2 changes: 1 addition & 1 deletion vocab_files/attribute_concepts/plot-permanently-marked.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
"permanently marked" ;
skos:definition "A checkbox option to indicate whether the plot will be permanently marked or not." ;
skos:historyNote "Updated the label, definition and the source based on the version-2 changes of the EMSA modules (EMSA v2 Review process, March, 2024)." ;
skos:prefLabel "plot - permanently marked" ;
skos:prefLabel "plot permanently marked" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/plot-permanently-marked.ttl"^^xsd:anyURI ;
tern:isAttributeOf tern:Site ;
tern:valueType tern:Boolean ;
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2 changes: 1 addition & 1 deletion vocab_files/attribute_concepts/plot-revisit-reason.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
dcterms:source "McCallum K, Potter T, Cox B, Laws M, Bignall J, O’Neill S, Sparrow B. (2023) Recruitment Module. In ‘Ecological Field Monitoring Protocols Manual using the Ecological Monitoring System Australia’. (Eds S O’Neill, K Irvine, A Tokmakoff, B Sparrow). TERN, Adelaide." ;
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:altLabel "site revisit reason" ;
skos:definition "A free text summary of any specific reason/s for revisit to a survey plot (e.g., phenological event, major disturbance, climatic event, etc.)." ;
skos:definition "A free text summary describing specific reason/s for revisit to a survey plot (e.g., phenological event, major disturbance, climatic event, or any related activity)." ;
skos:prefLabel "plot revisit reason" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/plot-revisit-reason.ttl"^^xsd:anyURI ;
tern:valueType tern:Text ;
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18 changes: 0 additions & 18 deletions vocab_files/attribute_concepts/site-revisit-reason.ttl

This file was deleted.

2 changes: 1 addition & 1 deletion vocab_files/attribute_concepts/slope-not-uniform.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:definition "A checkbox field in the Monitor App to indicate that the slope is not uniform across the plot." ;
skos:historyNote "Added new attribute based on the version-2 changes of the EMSA modules (EMSA v2 Review process, March, 2024)." ;
skos:prefLabel "slope - not uniform" ;
skos:prefLabel "slope not uniform" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/slope-not-uniform.ttl"^^xsd:anyURI ;
tern:valueType tern:Boolean ;
.
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5 changes: 3 additions & 2 deletions vocab_files/attribute_concepts/stratum-type.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -7,9 +7,10 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

<https://linked.data.gov.au/def/nrm/5871b3a2-b475-4432-9f15-65424f21a878>
a skos:Concept ;
dcterms:source "Hnatiuk, R.J., Thackway, R., and Walker, J. Vegetation. In National Committee on Soil and Terrain (2009) ‘Australian soil and land survey field handbook (3rd edn).’ (CSIRO Publishing: Melbourne)." ;
dcterms:source "Australian Vegetation Attribute Manual Version 7.0 Chapter 2.0 NVIS concepts and standard procedures." ;
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:definition "The type of vegetation stratum observed during a plot description module. A stratum is a distinct height class in the vegetation and must have a crown cover of 5% or more. The descriptors Upper, Mid and Ground reflect the major expected growth forms. " ;
skos:altLabel "NVIS vegetation stratum type" ;
skos:definition "This concept pertains to the categorization of vegetation into a stratum, which is essentially a division of vegetation into different layers or strata. The NVIS acknowledges these vegetation strata and classifies them into three primary layers: Upper, Mid, and Ground. Each of these strata is further divided into three sub-strata (e.g., U1, M1, G1, etc.), culminating in a total of up to nine distinct layers." ;
skos:prefLabel "stratum type" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/stratum-type.ttl"^^xsd:anyURI ;
tern:hasCategoricalCollection <https://linked.data.gov.au/def/nrm/eb6e9a4c-e277-4cb3-9792-9c91311b7e03> ;
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Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
dcterms:source "Cox B, McCallum K, O’Neill S, Bignall J, Peacock D, Sparrow B. (2023) Sign-based Fauna Survey Module. In ‘Ecological Field Monitoring Protocols Manual using the Ecological Monitoring System Australia’. (Eds S O’Neill, K Irvine, A Tokmakoff, B Sparrow). TERN, Adelaide." ;
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:definition "Target pest species observed during a fauna survey." ;
skos:prefLabel "target species - deer" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/target-species-deer.ttl"^^xsd:anyURI ;
skos:prefLabel "target deer species" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/target-deer-species.ttl"^^xsd:anyURI ;
tern:hasCategoricalCollection <https://linked.data.gov.au/def/nrm/ccf9ac8d-9af5-480c-a8fc-81ec38b0d138> ;
tern:isAttributeOf
tern:Attribute ,
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Original file line number Diff line number Diff line change
Expand Up @@ -9,10 +9,10 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
a skos:Concept ;
dcterms:source "https://linked.data.gov.au/def/nrm/26f843a5-e1ed-46da-b22b-053e567e3227" ;
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:definition "Taxon name determined during the process of field observation." ;
skos:definition "Target species that are protected under law (Environment Protection and Biodiversity Conservation Act 1999)." ;
skos:exactMatch <http://linked.data.gov.au/def/tern-cv/04a4c009-2a51-4bdb-96dd-0bfd1bed8826> ;
skos:prefLabel "target species protected" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/target-species-protected.ttl"^^xsd:anyURI ;
skos:prefLabel "target protected species" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/target-protected-species.ttl"^^xsd:anyURI ;
tern:valueType tern:Text ;
.

Original file line number Diff line number Diff line change
Expand Up @@ -11,8 +11,8 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:altLabel "Canis lupus" ;
skos:definition "Target pest species observed during a fauna survey." ;
skos:prefLabel "target species - wild dog" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/target-species-wild-dog.ttl"^^xsd:anyURI ;
skos:prefLabel "target wild dog species" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/target-wild-dog-species.ttl"^^xsd:anyURI ;
tern:hasCategoricalCollection <https://linked.data.gov.au/def/nrm/b4d958c7-2a3c-4c38-8640-dd0bf47883cc> ;
tern:isAttributeOf
tern:Attribute ,
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2 changes: 1 addition & 1 deletion vocab_files/attribute_concepts/track-station-spacing.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,6 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
skos:prefLabel "track station spacing" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/track-station-spacing.ttl"^^xsd:anyURI ;
tern:isAttributeOf tern:Site ;
tern:valueType tern:Text ;
tern:valueType tern:Float ;
.

3 changes: 1 addition & 2 deletions vocab_files/attribute_concepts/transect-alignment.ttl
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,7 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
skos:definition "The spatial orientation/alignment of the transect based on the compass direction of travel (in degrees)." ;
skos:prefLabel "transect alignment" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/transect-alignment.ttl"^^xsd:anyURI ;
tern:hasCategoricalCollection <https://linked.data.gov.au/def/nrm/232d5fdd-c15f-4a84-865e-46ea20b82ff1> ;
tern:isAttributeOf tern:Transect ;
tern:valueType tern:IRI ;
tern:valueType tern:Float ;
.

Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
dcterms:source "Bignall J, Laws M, McCallum K, O’Neill S, Lewis, D, Sparrow B (2023) Vegetation Mapping Module. In ‘Ecological Field Monitoring Protocols Manual using the Ecological Monitoring System Australia’. (Eds S O’Neill, K Irvine, A Tokmakoff, B Sparrow). TERN, Adelaide." ;
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:altLabel "field id" ;
skos:definition "A unique sequential identifier (i.e., additional to the automatically generated vegetation mapping ID), to assist field-based stratification of the project area, visual mapping and reporting (e.g. VA1, VA2, VA2b).given to the vegetation mapping point location." ;
skos:definition "A unique sequential identifier (i.e., in addition to the automatically generated vegetation mapping ID in the Monitor APP), to assist field-based stratification of the project area, visual mapping and reporting (e.g. VA1, VA2, VA2b) given to the vegetation mapping point location." ;
skos:prefLabel "vegetation mapping field ID" ;
schema:url "https://github.com/ternaustralia/dawe-rlp-vocabs/tree/main/vocab_files/attribute_concepts/vegetation-mapping-field-id.ttl"^^xsd:anyURI ;
tern:isAttributeOf tern:Procedure ;
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,6 @@ PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
dcterms:description "The attributes of the Plot Description - Standard module." ;
rdfs:isDefinedBy <https://linked.data.gov.au/def/nrm> ;
skos:member
<https://linked.data.gov.au/def/nrm/41b64ba2-aa1b-5b43-9cea-bfbd0e17f147> ,
<https://linked.data.gov.au/def/nrm/771927b4-cf76-5f9c-9c96-8335e575c71b> ,
<https://linked.data.gov.au/def/nrm/85a53519-b7d6-517f-8353-d83da5a3baec> ,
<https://linked.data.gov.au/def/nrm/8a4f71cc-7572-4b97-a3ef-c8061551b1fe> ,
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