Add auto publish #77
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| # Author - Stuart McAlpine - December 2022 | |
| name: read_swift CI | |
| # How does the workflow get triggered? | |
| on: | |
| # Triggers when push/pull-request made to the main branch. | |
| pull_request: | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| # List of jobs for this workflow. | |
| jobs: | |
| ci-with-pytest-mpi: | |
| # Our strategy lists the OS and Python versions we want to test on. | |
| strategy: | |
| # Don't quit all jobs if only one job fails. | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| os: ["ubuntu-latest"] | |
| # What operating system is this job running on? | |
| runs-on: ${{ matrix.os }} | |
| # Our CI steps for this job. | |
| steps: | |
| # Check out this repository code. | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| # Install Python. | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Install OpenMPI and HDF5 libs | |
| - name: Install OpenMPI and HDF5 | |
| run: | | |
| sudo apt-get update | |
| sudo apt install -y libopenmpi-dev libhdf5-mpi-dev | |
| # Install py_Read_swift. | |
| - name: Install pyread_swift | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install . | |
| python3 -m pip uninstall -y h5py | |
| MPICC=mpicc CC=mpicc HDF5_MPI="ON" python3 -m pip install --no-binary=h5py h5py | |
| python3 -m pip install pytest-mpi | |
| cd .. | |
| # Perform unit tests. | |
| - name: Test with pytest | |
| run: | | |
| cd tests | |
| bash get_ics.sh | |
| mpirun -np 2 pytest --with-mpi test_read_mpi.py | |
| ci-with-pytest: | |
| # Our strategy lists the OS and Python versions we want to test on. | |
| strategy: | |
| # Don't quit all jobs if only one job fails. | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| os: ["ubuntu-latest"] | |
| # What operating system is this job running on? | |
| runs-on: ${{ matrix.os }} | |
| # Our CI steps for this job. | |
| steps: | |
| # Check out this repository code. | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| # Install Python. | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Install MPI / mpi4py | |
| - name: Setup MPI | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: openmpi | |
| # Install dependencies. | |
| - name: Install pip and read_swift | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install . | |
| python3 -m pip install pytest | |
| # Perform unit tests. | |
| - name: Test with pytest | |
| run: | | |
| cd tests | |
| bash get_ics.sh | |
| pytest test_read.py |