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updated GHA to v4 #2

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updated GHA to v4 #2

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2 changes: 1 addition & 1 deletion .github/workflows/awsfulltest.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ jobs:
}
profiles: test_full

- uses: actions/upload-artifact@v3
- uses: actions/upload-artifact@v4
with:
name: Tower debug log file
path: |
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2 changes: 1 addition & 1 deletion .github/workflows/awstest.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ jobs:
}
profiles: test

- uses: actions/upload-artifact@v3
- uses: actions/upload-artifact@v4
with:
name: Tower debug log file
path: |
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2 changes: 1 addition & 1 deletion .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ jobs:
- "latest-everything"
steps:
- name: Check out pipeline code
uses: actions/checkout@v3
uses: actions/checkout@v4

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
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4 changes: 2 additions & 2 deletions .github/workflows/fix-linting.yml
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Expand Up @@ -13,7 +13,7 @@ jobs:
runs-on: ubuntu-latest
steps:
# Use the @nf-core-bot token to check out so we can push later
- uses: actions/checkout@v3
- uses: actions/checkout@v4
with:
token: ${{ secrets.nf_core_bot_auth_token }}

Expand All @@ -24,7 +24,7 @@ jobs:
env:
GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }}

- uses: actions/setup-node@v3
- uses: actions/setup-node@v4

- name: Install Prettier
run: npm install -g prettier @prettier/plugin-php
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14 changes: 7 additions & 7 deletions .github/workflows/linting.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -14,9 +14,9 @@ jobs:
EditorConfig:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: actions/setup-node@v3
- uses: actions/setup-node@v4

- name: Install editorconfig-checker
run: npm install -g editorconfig-checker
Expand All @@ -27,9 +27,9 @@ jobs:
Prettier:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- uses: actions/setup-node@v3
- uses: actions/setup-node@v4

- name: Install Prettier
run: npm install -g prettier
Expand All @@ -40,7 +40,7 @@ jobs:
PythonBlack:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/checkout@v4

- name: Check code lints with Black
uses: psf/black@stable
Expand Down Expand Up @@ -71,7 +71,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Check out pipeline code
uses: actions/checkout@v3
uses: actions/checkout@v4

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
Expand Down Expand Up @@ -99,7 +99,7 @@ jobs:

- name: Upload linting log file artifact
if: ${{ always() }}
uses: actions/upload-artifact@v3
uses: actions/upload-artifact@v4
with:
name: linting-logs
path: |
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