ReproSchema to NDA Converter

Convert NIMH-Minimal ReproSchema responses to NDA (National Data Archive) Common Data Elements (CDE) format. This tool helps standardize mental health assessment data collection by mapping ReproSchema responses to NDA's required formats.

Features

• Converts ReproSchema response files to NDA CDE format
• Supports multiple mental health assessments (see here):
  • DSM-5 Cross-Cutting (Adult, Youth, Parent/Guardian)
  • GAD-7
  • PHQ-9
  • RCADS (Youth and Caregiver)
  • WHODAS
• Handles subject demographics data
• Maintains data consistency through template validation
• Combines multiple responses for the same assessment when needed
• Debug modes for troubleshooting

Installation

# Clone the repository
git clone https://github.com/your-org/reproschema-mapping.git
cd reproschema-mapping

# Install dependencies
pip install -e .

Usage

Basic Usage

python scripts/process_mapping.py --response-dir /path/to/responses --cde-dir /path/to/cde --output-dir /path/to/output

Debug Modes

For troubleshooting, use one of the debug modes:

# Process single file
python scripts/process_mapping.py --debug single

# Process all files with detailed logging
python scripts/process_mapping.py --debug full

# Process all files with summary statistics
python scripts/process_mapping.py --debug summary

Directory Structure

.
├── data/
│   └── nda_cde/          # CDE definition and template files
│
├── scripts/
│   └── process_mapping.py # Main processing script
├── src/
│   └── rs2nda/          # Core conversion logic
└── tests/               # Test suite

Running Tests

pytest tests/ -v --asyncio-mode=auto